RNA id: XM_039800190.1


Basic Information

Item Value
RNA id XM_039800190.1
length 3579
RNA type mRNA
GC content 0.48
exon number 14
gene id tktb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19651238 ~ 19662853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcctcctcctcggttGTACTTGCATCGGGCAGCTAGTAGCGGCGTGGCGCAGCTTTGAACCTACTACCCCGGGAAGCAGTAGTGtgactttaataaaaaaaaaaaacataatttacttTCCAAGGTGACACGGTTCTCAAAAAATAATCCCGAAACCATGACTAGCTACCACAAACCCGATGAGAAAACTCTGCAGGGGCTGAAAGACGTCGCTAACAAGCTCAGGATCAACTCCATCAAGGCGACATGCGCCTCTAACTCTGGTCACCCCACATCATGCTGCAGTGCAGCAGAGCTCATGTCTGTGCTCTTCTTCCACACCATGCGCTATAAAGCAGATGACCCCCGCAACCAGTGTAACGACCGCTTTGTGCTCTCAAAGGGTCATGCTGCACCTGTCCTGTATGCTGCCTGGGCAGAGGCTGGTTTCGTGAAGGAGTCTGATCTGCTCAACCTGCGCAAGATTGACTGTGACCTGGAGGGGCACCCCACACCAAAACTGGCTTTTGTTGATGTGGCTACAGGATCTCTGGGACAGGGTCTTGGGGCTGCCTGTGGGATGGCCTACACTGGCAAACACTTTGACAAATCAGCTTACCGTGTGTATTGCATGATGGGTGATGGAGAGTGTTCAGAGGGCTCTGTGTGGGAGGCCATGGCCTTTGCCTCCTACTACAAGCTGGACAACTTGGTGGCTATCATGGATGTCAACCGGCTCGGTCAGAGTGAGGCCGCACCCCTGAAGCACGACATGGAGACCTACCGCAAGCGCTGTGAAGCTTTTGGATGGAACACGTATGTTGTGGATGGACATGATGTTGAGGAGCTGTGCAAAGCGTTCTGGCAGGCTCAGCAGGTCAAGGACAAACCCACTTGCATTGTAGCCAAAACATTCAAGGGCAAGGGACTCAAAAATATTGAGGATCTTGATAATTGGCATGGAAAGCCTATCCCTAAGGACAGGGTGGATGACATCCTAAAAGACCTCCAGGCTCAGATCCAGGTCCCCAACAAGACTGTGTGCCCTGAACTGCCCAAAGATGACACGGCACCTGCAGACCTTAGCACCATCTCCATGCCTTCACCCCCAGCATTCAAAATGGGAGAAAagATGGCAACAAGGCGTGCATACGGCCTGGCACTGGCCAAGCTGGGCCAGGCAAGCAAGAGAGTGGTGGCCCTCGATGGAGACACCAAAAACTCTACCTTCTCAGAGACCTTCAAGAAAGCCTTCCCTGACCGCTACATTGAGTGCTTCATTGCTGAACAGAACTTGGTGGGAGTGGCCATTGGCTGTGGCACCCGTGACCGCACAGTTGCATTTGCCAGCACGTTTGCTGCCTTCTTCTCTAGAGCCTATGACCAGATCCGCATGGGAGCCATCTCCCAGTCAAATGTCAACCTGGTAGGGTCCCACTGTGGGATCTCCATCGGTGAGGATGGTCCTTCCCAGATGGCCCTAGAGGACTTGGCCATGTTCCGTGCTATCCCAACATGTACTGTGTTTTACCCCAGTGATGCAGTGTCCACAGAGAAAGCCGTTGAGCTGTCAGCCAACACTAAGGGTATCTGTTTCATCCGTACCAGTAGACCAGACAATGAGGTCATCTACTCTCCAGATGAGAAGTTTGAAGTGGGCATAGCTAAGGTGGTGCGCCAGTCGGACAGTGATTGTGTAACAGTGATTGGAGCTGGTGTTACTCTGCATGAGGCCCTTGCTGCTGCTGATATGCTGGCCCTTGAAGGGAAGAAGATCCGTGTGATTGACCCGTTCACTATCAAGCCCCTGGATGCCTCTACCATCATGTCCAGTGCCAGAGCTACAAGGGGACAGATAATCACTGTGGAGGACCACTACAAGGAGGGTGGTCTTGGTGAAGCAGTGCTGTCAGCAGTGGGCAAGGAGCCTGGCATCGTTGTGACCCGGCTTGCAGTGACTGGTGTTCCCCGCAGCGGAAAGTCCCAAGAGCTGCTGGACATCTTCGGCATCAGCGCCAAGCACATTGCTAATGCCGTGCGTCAGACCTTTGCAAATTAAGGAGCATAATTTATCTCTCGCTTGCTGCTCTGTTCAATCTCAAACAACTTGCAGTTACCTGGCATGATCACGTGAAGACCTGTTAACTTTTTGTGCCCAAGTTCCATCTTGTGGCTTtgattaaagcaacactagagaacctTTCCAGTTTTggtcccctacaggttggaagcagaattgtctcattcaaactacagatccgctacccggtctgacaaacttgcatagtgcggttatagccggtaGAGAGCCGCAAAGTGAATGTAAAAGTGCCGTTAACCcggttacgagttgatgaaccactgaaacgattttggaacgGTTATTTTAAGTTACAAAATTCTCTTGTGTTGCTTTAAAGTACTGTGTGCGCTAACCCTGTATTGTTAATACTATCACAGATGGAGAGGGATGAGAAGGGAGTGTGTGACAGATGTAATAATGTTTATTACCACTAAGTCCCAGCAAAAAGTAATGTGTAGTAGCCTACCAGTAAGTCGGAGCAAGCAATTGAGTAACTGTTGAGGGTTCATATTGAGTAATGGTATATCGGTTTATGGTTAATGTTGTTACAGTATGTTTGATTTCTTGTTTTTCACGTGCAAAATGTCATTCCAACACCAGCAGCAGTAAGGGTTAACCAGAGCGTTGTATTTACTAGAGGGCTCCATCAGGGGGAACGTAAAACTCTTGAGCTATCTGTTGCAGTGCATGTCCCCTTCActcagctaaaagttacatagtgttgctttaacactTACTGCTGCTGGTGTTGGAATGACATTTTGCACATGAAAAATAAGAAATCACAAATGTACTGTAACAACTTTAACCATAAACTGATGCCATGAAAATGCCAAAATTACTCAATATGAACCCTCAACTGCTTGCTCTGACTTACTGGTAGGCTACTACACATTACTTTTGCCTAACTTACTGGTAATACACATTATTCCATCGGTCACAAGTAGAGTGTTGTCGACTCCTGTAGTGTTAATATTACTCTCCCGGTTTGCAGTGTCTAGTACCCTCTTCTGCAGCATTCCTTTCTTTTATCATGTTTTCCAAATTCCTTGCTAGTAGTTCAAACAAAAGCCTCACAGAATACTGTAAATGTGGTATGTTGACAGCTTACCATACCAGCTGTATGGTAAGCTGTCCTGGTTCTGATCCATTTTGAACTGTCAGGCCACAACTTTTGTTCTGCATTCCAACAATCCTTTCTTTTTCACATTCCTTACAACCATGCCTCATGTCTTCTCACTCAGCTGGCACTCATGcctccttttttgttttgaagAAGCACTATTACTGTTGTCATACATGTATGTACTATCAGTTTTGTAGTGATCAGTCCCAGCTTTGACGCTTGGCTGTGGTAGAGAACAGTTTCTTCAGATGGTGTGAAAAGTTAAACCTCTTAGTTGTGAACCGTTGAGCATTCCTGGCCACAATGGCATCACACAATGTTACTGCTTTCCAGGTCACTGGTGTCATCCTGTTCTACCTGTGTTGTGCTGAATTAAAAAGATTAACCCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68468 lncRNA downstream 53730 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 191833 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 236043 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 423333 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 700802 18948833 ~ 18950436 (-) False kcnd3
TU68493 lncRNA upstream 136352 19799205 ~ 19805539 (-) True LOC120558911
TU68516 lncRNA upstream 162558 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 400255 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 403009 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 403009 20065862 ~ 20072831 (-) True G51467
XM_039800432.1 mRNA downstream 1861 19637014 ~ 19649377 (-) True si:dkey-32e6.6
XM_039801413.1 mRNA downstream 19215 19615646 ~ 19632023 (-) True bgnb
XM_039801619.1 mRNA downstream 36641 19604756 ~ 19614597 (-) True b4galt3
XM_039801235.1 mRNA downstream 49169 19588284 ~ 19602069 (-) True atp6ap1lb
XM_039800316.1 mRNA downstream 75664 19438628 ~ 19575574 (-) True cacna2d3a
XM_039800433.1 mRNA upstream 519 19663372 ~ 19667912 (-) True lrrc23
XM_039800208.1 mRNA upstream 5243 19668096 ~ 19679320 (-) True rbm10
XM_039800207.1 mRNA upstream 5243 19668096 ~ 19678604 (-) False rbm10
XM_039800270.1 mRNA upstream 16638 19679491 ~ 19683947 (-) True LOC120558915
XM_039800233.1 mRNA upstream 21194 19684047 ~ 19689360 (-) True usp21
TU68271 other downstream 764485 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1764905 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1961478 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 3367382 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4797421 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 36920 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 38477 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 43826 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 657914 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1209855 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile