RNA id: XM_039800204.1


Basic Information

Item Value
RNA id XM_039800204.1
length 4458
RNA type mRNA
GC content 0.50
exon number 26
gene id uba1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19698028 ~ 19716311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATAGAGTGAGGGGAAACGGTTCTGGAACAGCCGGGGCAGCCGTCCAGCGGAAAAACTCACACAGAGCCCGCCACCCTGACACACTTTTCAGTTTGCAATCAGCGGCAGTGTTGATTTATCACATTGTTTGTTAGTTTTCTTGCTTAAATACAAGCCGATTTTAATACTACAGATCAGGCCGAGTAATATCGGATGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCTTGTCAGGAACAGAGACGAAGACGGGATCCCACTGCTCCTCCTCTAACTCTGTCAGAACTGATCTGTCCCACACACCTGCCAACGGCATGGCTAAGAATGGCAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAACTTTACGTGTTGGGCCATGAAGCAATGAAGCGCATGCAGAACTCCAACGTCCTAATCTCTGGTATGAGAGGTCTTGGAGTTGAGATTGCCAAGAACATCATCCTGGGAGGAGTTAGAAGTGTCACTGTGCACGACCAAGGAGTTGCAGAATGGAGAGACCTCTCCTCTCAGTTTTACCTTCGGGAGGAGGACCTGGGGAAGAACAGAGCAGAGGTGAGTCAGCACCGTCTGGCTGAACTCAACAGCTATGTTCCTGTGAATGCCTACACCGAAGAACTCACCGAAGACTACATGACAAAGTTCCAGGTGGTAGTGCTGACTAACTCCACTCTGGAAGAGCAGCTGCAAGTGGGAGAGTTCTGCCACAGCAAAGGAATAAAGCTAATCGTGGCAGACACACGTGGTCTGTTTGGCCAACTTTTCTGTGACTTTGGTGAGGATATGACCGTGTACGACACCAATGGAGAGCAGCCGCTGAGTGCCATGATTTCCATGATCACCAAGGACAATCAGGGGGTTGTGACATGTCTGGATGAGGCTCGTCATGGCTTTGAGAGTGGAGACTATGTCACCTTCACAGAGGTTCAGGGTATGACAGAGCTCAATGGCTGCCAGCCTGTGGAAATTAAAGTTCTTGGTCCCTACACCTTCAGCATCTGTGAGACATCTGGCTTTACAGATTACGTAAGAGGAGGAATTGTTTCCCAGGTCAAGATGCCCAAGAAGATTTCTTTTAAATCCATCTCTTCCTCCATGAGTGAGCCAGAGTTCATACTGACAGACTTTGCCAAGTTTGAGCGTCCAGGACAGCTGCACGTGGGCTTCCAGGCTATCCACGCCTTCCAGAAGAAACACAACCACCTTCCTGCACCTTGGAGCCAGGCTGATGGTGATGAGCTATtgacattagccaaagaggtgAACTCTGCCCAGACGGGTTCAGCTAAAGTCGAGCAGTTGGATGAAGCCCTTATCAAAAAGCTGTCATTTGTTGCTGCTGGTGACCTGGCCCCTGTCGATGCCTTTATTGGCGGTCTGGCTGCACAGGAAGTGATGAAGGCATGCACTGGAAAATTTATGCCCATAATGCAGTGGCTGTACTTTGATGCCCTGGAGTGCCTGGCTGAAGAGGAAGGAGTTGAGCTCAAGGAGGAAGAGTGCGCCCCTAGGAACTGTCGATACGATGGGCAAATTGCAGTGTTTGGCACCAAGTTGCAGGATATGCTTGCCAAACAGCGCTACTTCCTGGTCGGAGCTGGTGCCATTGGCTGCGAGCTGTTGAAAAACTTTGCCATGATTGGACTGGCAGGCGGGGAGGGAGAGGTCATTGTGACAGACATGGACACCATAGAGAAGTCCAACCTCAACAGACAGTTCCTCTTCAGACCCTCAGACGTTACGAAAATGAAGAGTGACACAGCTGCCGCTGCAGTAAAGCAGATGAACCCCTCCATCAGGATCACCGGTCACCAGAACAGGGTGGGCCCTGACACCGAGAGGGTGTACAATGACGACTTCTTTGAAAGCCTTGATGGAGTGACAAATGCACTGGACAATGTTGATGCACGTATGTACATGGATCGGAGGTGTGTGTACTACCGCAAACCCTTACTGGAGTCTGGTACTCTGGGTACCAAAGGCAATGTCCAGGTTGTGATCCCCTTCCTCACAGAGTCGTACAGCTCCAGCCAAGACCCACCTGAGAAGTCCATCCCCATCTGTACCCTCAAGAACTTCCCAAATGCCATTGAACACACACTGCAGTGGGCCCGCGATGAGTTTGAGGGACTATTCAAACAACCACCAGAGAACGCCATGCAGTACCTCTCAGATCCTAAATTCATGGAGCGTACTCTGAAGCTCCCTGGAGCTCAGCCTGTGGAGGTGCTGGAGGCGGTTTACAAAAGTCTCGTCACAGACTGCCCCCACAGCTGGGCTGACTGTGTAGCCTGGGCACGCAACCACTGGCAGTGCCAATACAGCAACAACATCCGCCAGCTCCTGCACAACTTCCCCCCAGATCAGCTCACCAGCTCTGGTGCCCCCTTCTGGTCTGGCCCAAAGAGGTGTCCTCACCCCCTAGAATTCAGCACCAGCAATGAGCTGCACATGGACTATGTAATGGCAGGAGCCAACCTGTTTGCCCACACGTACGGCATGCAAGGCAGCACTGATCGTGCAGGTGTGATTAAGATCTTGCAGGACGTCAAGGTGCCACCCTTCACCCCTCGTTCAGGGGTTAAAATCCACGTCTCTGATCAGGAGCTGCAGAATAGCAATTCCTCTGTTGATGACTGCAGACTGGAGGAGCTGAAGGCCCAGCTGCCTTCCCCTGAGACTTCCCAGTTCAAACTGTGCGCCATTGACTTTGAGAAGGATGATGATACCAACTTCCACATGGACTTCATTGTAGCATCATCCAACCTGAGGGCAGAGAACTATGACATTCCCCCCACGGACAGACACAAGAGCAAACTGATAGCTGGCAAGATCATTCCTGCCATCGCCACGACCACGGCCGCAGTGGTGGGCCTGGTGTGTCTGGAGCTCATCAAGATTGTCCAAGGACACAAGAAGCTGGAATCTTTCAAGAATGGCTTCATGAACTTGGCTCTGCCTTTCTTTGCCTTCTCTGAGCCCATCGCTGCTCCCACACACAAGTACTATGAAATCGATTGGACGTTGTGGGATCGCTTCGAGGTCACTGGGCTGCAGCCCAATGGAGAGGAGATGACACTCCGACAGTTCCTGGACTACTTTAAAAATGAGCATAAGTTGGAGATCACCATGCTTTCTCAGGGAGTGTCCATGCTCTATTCTTTCTTCATGCCTGCTGCCAAACTCAAAGAGAGACTGGACCTGCCGATGACGGAGATTGTCACCAAGGTGTCCAAAAAGAAGCTAGGCAAGCATGTGAAAGCCCTGGTGTTTGAGCTGTGCTGTAATGACCTGTCAGACGAAGACGTGGAAGTGCCCTATGTCAGATACACCATCCGCTGAGCTCCACGATGATCCTATCCACAGGAGGGTGGGAAGACAGGGGGTGTGGGTGTTTGAGGAGGGAATTGGGGATTGATGGGTGGGTTGATCCAGGTCAGCTCTATTGGAtcaatcagttttttttagGCCTGTGGTTTGTTTAAACCTGTGCCTGAATGTACATAGCCCCAGTAAGCTGATTTAAGGTTAATTGTATGTGTGTTAGGTATCAGTTGTTGGTCGGCTGTGGGAACAGGGGGGTCATTGAAGGAAGGGAGCATGTATTCTGGACCTCTTGATGTTTCTCAGTAGCAGAACCTTTCCGCTCGGTTTAATTCTAAGCATTAGTGTTCTCTTGGTACTCCAAAGCCCAGCCAGTGTCCCACTAAAACATCCTCAAACTCTTTACTAGCCTTCAGCACTTAAGGAGGGATCTTTTTAATGCAGCCAACTCTCTCCCCTCCACTCTACTTGCTCTCTTCCCTCTTCCAACCCCTGTCTCATAGACCTGACcccctgactttttttttttataaagatgtACCTCATTAAATTTCAGCCAAGAATCCCAGAAATGGTGACATGTATTGAAAATCCATTTTGCCACCAGGCCGTATCCTTGCCCTTAATTCTACCCGAGACCCCACATTTGAAACTGTAGGAGCACCTGAGGACACCGCTAAACCAGAGTCAATAGCCCCTCCTGGCTGGAAAGTAATCTGAGTATCTCAGCTGGCATAATATGAACCCTTGCCGGTTTGAGGCACCACTACACCCACCTCAACTAGCACTCTGGCTTCGGAGGGGCTCTTGCACATGACATCAGttttctctttattctctttatatttcatgtgttttgttcatttctattttattttttcttttggggTGGGGGAGGCCGACTGTTTTGGTGCACACCTTGTAGATCATAAACTGTcttctttttactttaactCCAAATGACATTACATTATAAGAGCAAGGCAATGAGATGGATCTTGAAATGGGAGCACTTAGTGTGATAGTGAATAAACATGTAAAAACTCCCCTGCATTTGTGTGGTCATTTGATAACTGAtgattaaataaattattaaatgtcA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68468 lncRNA downstream 100520 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 238623 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 282833 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 470123 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 747592 18948833 ~ 18950436 (-) False kcnd3
TU68493 lncRNA upstream 82894 19799205 ~ 19805539 (-) True LOC120558911
TU68516 lncRNA upstream 109100 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 346797 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 349551 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 349551 20065862 ~ 20072831 (-) True G51467
XM_039800221.1 mRNA downstream 487 19689551 ~ 19697541 (-) False arhgef3l
XM_039800222.1 mRNA downstream 1216 19689551 ~ 19696812 (-) True arhgef3l
XM_039800233.1 mRNA downstream 8668 19684047 ~ 19689360 (-) True usp21
XM_039800234.1 mRNA downstream 8670 19684047 ~ 19689358 (-) False usp21
XM_039800270.1 mRNA downstream 14081 19679491 ~ 19683947 (-) True LOC120558915
XM_039800212.1 mRNA upstream 457 19716768 ~ 19753439 (-) False camkvl
XM_039800211.1 mRNA upstream 457 19716768 ~ 19753439 (-) True camkvl
XM_039800264.1 mRNA upstream 86555 19802866 ~ 19815318 (-) False LOC120558911
XM_039800263.1 mRNA upstream 86555 19802866 ~ 19815316 (-) False LOC120558911
XM_039800277.1 mRNA upstream 106332 19822643 ~ 19823653 (-) True ngfa
TU68271 other downstream 811275 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1811695 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 2008268 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 3414172 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4844211 14845338 ~ 14853817 (-) False G49845
unassigned_transcript_227 other upstream 604456 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1156397 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 1167627 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 1167627 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 1167627 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile