RNA id: XM_039800234.1


Basic Information

Item Value
RNA id XM_039800234.1
length 2315
RNA type mRNA
GC content 0.47
exon number 12
gene id usp21
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19684047 ~ 19689360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGGGGAGAGAGGTAGACTTTCAGTTCTAGCCTACAGTCACACAGTGAAACAGTAGACGTCCCCTTATGCATTTTTAACAGCTCAGCAGGTGATGGGAACAGTTTGGTTGGGACAGTTTGTCCACAGATAGAGTGATCAGCTGTGGATGACATCCCTCGTCATTTGCTTGGTATAAAAGgactctttctcccttttttacTACCACCACATTCTGCTCACCTTTGACACTGCATGTGAAAAGAAAGAGGTGGTGCAACCTTCCCAGTTTAAGGTGCAAACCGCTTGGCTTTCATTTCTTTGGGAAGCCCTACTATCTGTCTCAGGTGAAGTGGTCGGAAATTCTGAGGTGTACCAGTAAAATAGGATGCCCGGAGCCAGTGGCGTCAACGTTGAGGGCTCTTGTGAGGCCCTGTGCCGAACCCTGGTCTCCCAGAACGGACTCCAGAGAGAGACAGCCGACATCTCCCAGTCTGTCCTCTACACCTCACTGATGGGCCTGCTTCTGGTTGCTGACAACGAGAAAAAACAGCTCACCATAGGAAGTGGAAGGGTTGGCCTTAGAAACATAGGAAACACATGTTTCCTAAACGCAGTAGTCCAATGTTTGTCTCACACACGTGGCCTACGGGACTACAGCCTCCTTATGTCCTACAGGGATGAGAAGTTCTCCAAAGAGGAGGCTAAGCTCATGGAAGCTTTCTCTCAGGTGCTGTCAGGCCTTTGGGACGTAAATGAAGGGGACACAGTTGTAAATCCACGACAGTTTTACAATATATTTAAAGAAGCAGTGCCTTACTTCAGTGGATACAGTCAACAGGATGCGCAGGAGTTCCTCAGGTTCCTATTGGACAAGCTGCACACAGAAATCAACCGCAGACCCTACGTTCGACGAACAGGGAAGGAGCCCGTACAAAAATTTGCCAGAtttcgGATTTCGGAAGAGGCAGCTGCCATGTGGAAGAAGCACTTAGAGAGAGATGACAGCAGAATAGTAGACCTGTTCTCGGGCCAGCTGAGGAGCTCGCTGCATTGCTCAGTGTGCTCCCACTACTCCAACACATTCGATGTGTTCTGCGATCTGTCGCTGCCCATCCCCAAGAGAAGCTCTGCTGGGCAGGTCACGCTGAGGGAGTGCCTGGAGCTCTTCTCTCAGGAGGAGAAACTGGACAAGGAGAATTCACCAATGTGCGAGAGGTGTAACAGGCATACAGAGTGCACCAAGCGACTTTCCATCCAGAGGTTTCCCCAGGTTATTGTGATCCATCTGAACCGCTTTACGACGTCACGGTGGTCCATCAGTAAAAGCACAGTGTATGTGTCCTTCCCAATCACTAACCTGGACCTGGGACGCTACGGGCCTGTCGACTGTGGCCCAGTTCTGTATGATTTATATGCAATATGTAACCACGCTGGGACGGTAAACATGGGCCACTACACAGCCTGCTGTTCAGATGAAAATGGGTGGTGCTTCTACAATGACTCCAGTGTGACTGCAGTCTCAGAGAACCAGCTTCAGACCAACCAAGCCTATGTGCTGTTCTACCAGCGCAGCAACAGCACCGCCGCCATCAGGAAATAGACCCGAGACTGGCTGAGCcaagcagccaatcagagcaactTTACCTCCAGTGTCCATAGAAACAAATAGAAGCAGCAGTGCTGTAACTCTGACATGAACAGCTCAGTCTCAATAAGCATGCCCTCAAATaaactgaggaggagagagaagccaTGCTCACTTTAAGGAGGGCTTGATGAGGCGACCTCGCCTCCTGAAACAAGGAGATGCTTTTGAAGAGTCTAACTGAGAGAGCTGAGGCAGCTCAGACGGACTGCAGCCCTCTGTGCCCTTCTTCTCACGCAGGAGTGAGCAGTGTACTTGCACAGAGTTCTTAATGTTAGATCATTGTGATTCATGCTTGCGATGCAACATAAACCCAAATAAATAATGGGAAAACTCTTTAGTGGGATATAAATTAGCCAACATTTGATGACTCAATTGTGACAGacctttcattttaaaatgacctTTCATCAGTTTTGTGAAaatgtacagtaggctactttaaTTCAATGTGTAAATATCTGTAGGTTATGCTATAGGCTACGTTTGTCTCTTTATCTTTATCTCTCCTCATGGACAGTTTACCCTGAAACTTGAAAACATAACAATGGGCTATATTTTTCATCTAACTGAATTGtaatttctatatatatattcatatgtgTATGTACATATTTTTTACACAATTGAATGTAGCCTATTGCATTATTGATATTTAAAACCGTCAATAAAAGATCAATGAAAAAGTC

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68468 lncRNA downstream 86539 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 224642 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 268852 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 456142 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 733611 18948833 ~ 18950436 (-) False kcnd3
TU68493 lncRNA upstream 109847 19799205 ~ 19805539 (-) True LOC120558911
TU68516 lncRNA upstream 136053 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 373750 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 376504 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 376504 20065862 ~ 20072831 (-) True G51467
XM_039800270.1 mRNA downstream 100 19679491 ~ 19683947 (-) True LOC120558915
XM_039800208.1 mRNA downstream 4727 19668096 ~ 19679320 (-) True rbm10
XM_039800207.1 mRNA downstream 5443 19668096 ~ 19678604 (-) False rbm10
XM_039800433.1 mRNA downstream 16135 19663372 ~ 19667912 (-) True lrrc23
XM_039800190.1 mRNA downstream 21194 19651238 ~ 19662853 (-) True tktb
XM_039800221.1 mRNA upstream 193 19689551 ~ 19697541 (-) False arhgef3l
XM_039800222.1 mRNA upstream 193 19689551 ~ 19696812 (-) True arhgef3l
XM_039800204.1 mRNA upstream 8670 19698028 ~ 19716311 (-) False uba1
XM_039800203.1 mRNA upstream 8670 19698028 ~ 19714656 (-) True uba1
XM_039800212.1 mRNA upstream 27410 19716768 ~ 19753439 (-) False camkvl
TU68271 other downstream 797294 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1797714 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1994287 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 3400191 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4830230 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 10415 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 11972 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 17321 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 631409 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1183350 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile