RNA id: XM_039800236.1


Basic Information

Item Value
RNA id XM_039800236.1
length 2429
RNA type mRNA
GC content 0.44
exon number 8
gene id etv7
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19990916 ~ 19996340 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttgcacaGAGTTtgtcatttaaatatttaatacgCGATAGCTATAACAGTTTTTTCCCCCTTAGGCCTACTCAAATTTATATAAGATGTCATTTACACTAAGCTCCCAAAAATATGCTGCTTTGTTGCGCTCTTATCTAGTGCAGTCAAATGTTGTTGGACATGTCCTCAGCCGTTGCTTCCTCCAATCGGCCTATCTTGCACACACCCCCTGCAAGGATTATGTTTCTTTCGTTTTCATTTCCCGGAAGGATCGAATGTGAAAATAGTGGAGTTTTATTTCTTCGAAAGTTATCCTTTCTTTATTCAATATGGAATTTGGGGAGATTTGACCTGCAGTGTATTTTATTCATTGGAAGAGTTGTATACCTGCTTATAAGGAAATAATCGTTTGTTTGCTTTTTCGGACAGTCGAACAGATAAAGAACATTTCCATGGAAAACGTTTCCCCCTCACCTTTGGACAAGCAAGAAAACAGAGAAACCAGTCCTCCATCCATAATGCAGGGAAAGCAGGTCAACGTTCCTCTGAGTGTGCATCACTCACCGCCTAACCAGCTTCCCTTGGTTAGTCCCCCCACACAAGAAGACCTGTGGCATCTACCTGGACGGCTGCGAATAAACCCATCTCTGTGGGACAAGGAGGATGTTGCCCACTGGCTCCATTGGGCTCAGAGAGAGTACTCACTGCGCCGGCCTGAAAAAGGACACTTTGAGATGAACGGTCGAGCCCTGTGCCTGCTCACCAAGGAGGACTTCAGACGCCGCTGTCCCAGCTCAGGTGATGTTCTGTATGAGATCCTACAGTGTGTTAAACAGCAAAGGAGGACTGTTGTTTGTGACCCCCAAAATTCGTCTCCCTCCCTGGCAACTGGACCCATCCAGAGCCCAGACAGCTGCCAGATACCCCCTCATAGTGTCCAAGAGCCTCAGCCCCCCACAGTCAATGACACCCAAGatGGATCAGCAGCTGTCCCTGTGTTGCCCCACAACCCAGTTCAGTGTCCTCCCCAAACAGAGAGTGTCCTCCAACCGCTCAACCTGTCCAGTCGAGAGAAGCCAAGGAGCGCAATGCACAAAGCCAACGGCCGAATCCCAgAATGCAGACTGCTGTGGGACTATGTGTATCAGCTACTGTGTGATGACCGTTACCAAGAATACATCCGATGGGAAGACCAGGACAACCTGGTGTTCAGGGTGGTGGACCCAAACGGACTGGCGCGTCTCTGGGGAAACCACAAGAACCGAGACAATATGACCTATGAGAAAATGTCCCGGGCTTTGCGGCACTACTACAAGctcaacatcatcaaaaaggAGCGAGGACAAAAACTTCTCTTCAGGTTTCTGAAACTCCCACAGGACACCAAGAGAGCGCAGGCTGACCCTGCCGTGTCCCTGGAACACACTCCATCTCAGAACGGAGATTTTCCAGACAGCAGTCCTACACATGAGTTCAGTGAGGACCATTTTGAGGTTTCCCCTGATCGTGCTTCTCCACTAACCTGACGCACCACATgatttgttacacagaaccatctgagaagccgtcattggaaactgtttggaaaagggcgggccctttaaaaaaaaaactggtagaTGAGGAGTCTATCACGTCCACAATTGTTTTTTGAACAATTGAATTGTCGTGGtcatcacacacacctaaaccacgtcTGTAGCTGCAAatgcattacttgaagcctgatAAGAAGGATTTTTGTGTAATATGTGATTCAGCGATTCCCACGTGATATCGCGAGAATCCAGCTGGCGTGAAAGGTAACTTCTCCACAGCATCCTCAATAGAACAGAAAACTATTTATTAAATGTCCTAAACAcaatacaacaacacaaatgATTACAGACTATAATATAGATGTGCTCAGAAAATAACCCATGCATGTACAGGCTTAACAAAATGCactgtatttttttagttttttcacaATGATATTGCTTTTCGTTTTGCTGTGAATAAAAGTATCTATCAATGGGATCAGAACAAACACTAATATTAAGGGGCGAGGAAAACTCTGAAAGACATCACATCAATATTCAAATGGGAAAAGGATCATAATAACTTAGATTTCTCAGGCTTGCTCAACATAACCGCAATACAACAGATGCACTTatttttatatactatatactgaAGGTCTTGCAGGTACTGTAGGTGTTGGAAATTACGTTGAAATTGCAGATTGTTGTTTAAATAGGAAGAGGCAGGGTGAAGtgattttgtttgtgttcataCAAAAACATATAGTGTTGCTGGTTAAATGCCAGTTTgtacagttttgttttgtttttacaaattgTTTGCTTAATCAACCTCAAGATGAGGTATTTGTTAAGTTGCATATAGCATAAGTTGGTATAGCCTAGACCTATGTTAATTGTCAATGTTTTTTCTGCTttgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68516 lncRNA downstream 140256 19825411 ~ 19850660 (-) True G51266
TU68493 lncRNA downstream 185377 19799205 ~ 19805539 (-) True LOC120558911
TU68468 lncRNA downstream 393408 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 531511 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 575721 19327652 ~ 19415195 (-) True G51147
TU68785 lncRNA upstream 66768 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 69522 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 69522 20065862 ~ 20072831 (-) True G51467
TU68779 lncRNA upstream 69522 20065862 ~ 20073593 (-) False G51467
TU68847 lncRNA upstream 302711 20299051 ~ 20300666 (-) True G51518
XM_039800241.1 mRNA downstream 1921 19984434 ~ 19988995 (-) True LOC120558903
XM_039800277.1 mRNA downstream 167263 19822643 ~ 19823653 (-) True ngfa
XM_039800264.1 mRNA downstream 175598 19802866 ~ 19815318 (-) False LOC120558911
XM_039800263.1 mRNA downstream 175600 19802866 ~ 19815316 (-) False LOC120558911
XM_039800212.1 mRNA downstream 237477 19716768 ~ 19753439 (-) False camkvl
XM_039800206.1 mRNA upstream 7862 20004202 ~ 20041438 (-) True LOC120558880
XM_039800251.1 mRNA upstream 124505 20120845 ~ 20134632 (-) False tnnt2a
XM_039800248.1 mRNA upstream 124505 20120845 ~ 20134632 (-) False tnnt2a
XM_039800250.1 mRNA upstream 124505 20120845 ~ 20134632 (-) False tnnt2a
XM_039800247.1 mRNA upstream 124505 20120845 ~ 20134632 (-) False tnnt2a
XR_005639385.1 other downstream 284116 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 289465 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 291022 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1104163 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 2104583 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 324427 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 876368 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 887598 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 887598 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 887598 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile