RNA id: XM_039800238.1


Basic Information

Item Value
RNA id XM_039800238.1
length 1488
RNA type mRNA
GC content 0.47
exon number 4
gene id fkbpl
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20325451 ~ 20328339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCATTACACAGACGAAGAAGTAGAGGAAGGAGAAGGCGAAAAAGACGAAAGCGTTTGTATATCTTCTGACCATCTGACAGTTTATTTGTTACCGATTGAGGGGATAGCTAATACTTCATGTCAGACTTGTGTATGAGGAATGGATGCTGTTCACCCTTTTGAAACACTGCACGGCAACGGTGATCATGATGGCGTTGAGGTCACCTCCTGGGTGTCGGTGTGTCCAAGAGGCCTCTGGAAAGTCCAGCAAAAGCTGACACACAAAGGGAGTCGACAGACCGTCTCTTATTCTGGAGATGATGCATCATGTTCATCCAGTTACTGTCCAAGGTTGGGTTCACTGTGTCGAGTCCGAGTGCGGCTCAAAGCTAACATGGATAAGGCAGAGAGTTTAGCATCTGAAAAGAGAAATGAGAAGCTGCCAGTCCAACCTGACCAATCAGTGACTGAGGTTACAGAGGCCACAGCCTTCCCAAGGTGTCAGGACTCTGTGCTGCAGGTCCCACTGGGGGACTGGACAACACTGAGGCTAGGCGAGGGTCAGTGCGATATCACAGAAGCATGTGTGGAGGGgatgagagcgagagagaaatgTGAGGTACTGATTTCTCCTGTGGGAAATGGACCAGATGTCTCAGTTTCCCATCCCGATGAGGAAAACCTGCCTTTATGTGCCACAATTGAACTCAAATCTTTCACACCAGGCAAGGAATCCTGGGAGATGTCTCCTGGTGACAAGTGGCAGTGGGTGAAGTCACACAAAGTGAGGGGAGGAGTAAGATTCAGGAGTGGGGATGTGTGGGGAGCAGCAGACAGCTACAGCCGGGCCCTCAAACTTCTCATCACTCTCCATAGCCATGTTAGAGAGGTGgagaaaaaagaggaagaagcagAGGAGCTGAAAGACACAAAAAGTGGTGATGAAACAAAACAACTTCCTTCAGCTAATGAGTTTAAAACCATTAAATCAGAGCTCTACTCAAACATGTCCTTGTGCCAGCTCAAACTGAAACAACCACAGCGGGCTAAGGCCAGTGCGGCTAAAGCTACTCAGCTGGAACTGGGTGGCGCTAAAGCCTGGTACCGGATGGGCCAAGCCTGCCAGATGTTGAATGAGCTGGAGGAAGCACGGCAGGCGTTTAGGAAACTGCTGGAGCTACAGCCAGAATCCCCTGCTGCTTTGAAGGCACTTAAAGACATAGCAagtaaagagaaagagagaaatgcaCAGTTGGGACTTAGACTCAGCAAAATGTTCAGCTGAAGATTACATATTATCAGTTTATTATAGAATGTTATCTGTAGAATGGTATGTTTCTTCTCATGACATGAGTCACCGTTAAATGGAAATACATCTACTGCCACTACCTGAGCTCAAAAGTAAAGCCATTAATCAGTGaatgcatgtttttctcccaactCTATGCTGCTTGTGTATGAGATGCCTGAATGTAACTTCAAAGTAAAAACCACATGTCAAAAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 24785 20299051 ~ 20300666 (-) True G51518
TU68779 lncRNA downstream 251858 20065862 ~ 20073593 (-) False G51467
TU68775 lncRNA downstream 252620 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA downstream 252620 20065862 ~ 20072831 (-) True G51467
TU68785 lncRNA downstream 261915 20063108 ~ 20063536 (-) True G51468
XR_005639206.1 lncRNA upstream 39647 20367986 ~ 20382875 (-) True LOC120558923
XR_005639207.1 lncRNA upstream 39657 20367996 ~ 20382875 (-) False LOC120558923
TU68877 lncRNA upstream 113157 20441496 ~ 20441807 (-) True G51544
TU68904 lncRNA upstream 334014 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA upstream 334089 20662428 ~ 20663576 (-) False LOC120558476
XM_039800262.1 mRNA downstream 3919 20317192 ~ 20321532 (-) False ccdc115
XM_039800261.1 mRNA downstream 5188 20317192 ~ 20320263 (-) True ccdc115
XM_039800215.1 mRNA downstream 9429 20311426 ~ 20316022 (-) True si:dkey-109j17.5
XM_039800254.1 mRNA downstream 15985 20306440 ~ 20309466 (-) True apobec2b
XM_039800268.1 mRNA downstream 156560 20158654 ~ 20168891 (-) False csrp1a
XM_039800269.1 mRNA upstream 81198 20409537 ~ 20431731 (-) True LOC120558914
XM_039800315.1 mRNA upstream 401767 20730106 ~ 20740959 (-) True copz1
XM_039800290.1 mRNA upstream 423244 20751583 ~ 20754530 (-) True hnrnpa1b
XM_039801897.1 mRNA upstream 471760 20800099 ~ 20808534 (-) True hoxc1a
XM_039799366.1 mRNA upstream 489079 20817418 ~ 20820599 (-) True LOC120558390
unassigned_transcript_227 other downstream 4613 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 618651 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 624000 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 625557 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1438698 18880365 ~ 18886753 (-) False LOC120558627
XR_005639106.1 other upstream 544369 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 555599 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 555599 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 555599 20883938 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other upstream 555599 20883938 ~ 20952009 (-) False LOC120558386

Expression Profile