RNA id: XM_039800245.1


Basic Information

Item Value
RNA id XM_039800245.1
length 1867
RNA type mRNA
GC content 0.46
exon number 16
gene id tnnt2a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20120845 ~ 20134632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaacaacaagggGTCCTGAAGCCTCTCTCCCCCATACACAGCCTGTCCCTTTACCCTCTGAGACCCACCTCACGTTCCTATTAGTGAAAGCAGCGACCTCTCCTCTGCTGCCCATTCAGTCTCTCCATCAGCTGTCTTTCTTCATCACTCTTATTCAGATTCACTGCTGCACACCTGAACGCTCCCTGTCATGTCTGACAACGAGGAAGTGGTGGAGGAATATGAGGAGGAGGTGGAAGAGGAGGCTGCTGAAGCAGGGGAGCAGGgggtagaggaggaggaggagcaggagcaggtggaggagcaggaggaggcagaggaagAGGCCGTAAAGGAAGAGGACGGACCTGCTGCAGAGAAGGAGGAAATAGATGGAGAAGCGGAGGAGGGAGAAGAGGAGGAGGCCAAACCGAAATTCAAGCCATTTATCATGCCCAACCTCATCCCTCCTAAGATCCCAGATGGAGAGAAGGTGGATTTTGATGATATACATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTTCAGACTTTGATCGAGGTTCACTTTGAGAGcagaaagaaggaagaagaagagctcaTTAATCTCACGGAGAGGATTGAGAAGCGCCGTTCTGAGCGAGCAGAGCAGCACAGAAtctgcagtgagagagagaaagagcgacAGAAGCGCCTTGAGGACGAGAGAGCTCGTAAGGAGGACGAGGAGGCCAAGAGGAGAGCAGAGGATGAAGctaagaagaagaaaacccTCACTAGCCTCCACTTTGGAGGTTACATGCAGAAATTGACAGAAAAACGGAGTGGTAAGAggcagactgagagagagaagaagaagaagatcctGAGCGAAAGACGCAAATCTCTGGACATCGAGAACATGAGCCAGGACAGAATCAAGGAGAAAGCTCAAGAGCTGTGGGAGTGGATGCACGAGCTGGAGGCAGAGAAGTTTGAACTGCAGTACCAGATCACCAGACAGAAATATGAAaTTAATGTTTTGAGGAACCGCGTCAGCGACCATCAGAAAATATCCAAGAGGACCAAGAGAGGCCTGAGGAAGTAATTGCTGAGTGAGCATTGTAACTATCAGCCCTTTCCCAAAGCCACCGCCTCAAACCAATCCATGGCTTTCCTGCCACACCCCAGTCACACCTGTTTCCACATAACCATCACCTACAGTACCAATTATATCCAGTTTAAAAGCGCCATCTCACTCTGTTGTTTTCCTCTTATTACCACCTTTTAAATAAGATCCCCTGTGTTTAGGgtgtaaataaaacaatttcagTTCAATCAATGACTTCTTGCTCTTTCAGACTTTTGAGCATGGGTGCATGAGTTTATCAGCACCCAAAACTCCAGAGAGTAAAATGACATTCAAGACATGAATGCAGAAAGCCTAAAGCAAATAGTCTCTTCCGACTTAGAGACAGGCTACGACATGACTAAGACTGTAATGATGCTCCTTGGGCTAACGCCCAGACCCtccacccaacacacacacattcacacaaatacacacacaaagctggAAGAGAATGAATCACTTTCATTTTACAGTAGTCCAGGTGGGAAAATCcttcatttgaaaaaatgtgctcCTCCTTCAACAGCTTTCCAACTTCTCTTCAAAGTGTATCAAAAAGGTAATTTATATGACAACATACTTGGTTCATGACAAGACACAGAGCTGCAAAACTAAATAGCAATGAAATCATTGAATCTGATGTGGCACCAAGTATGCGGAAAGCGTTACAACTTGTAATGAAACAAGCATACCATTTAGGGATAGTATGATTTATGAGTTTGTGGCCAGATTTGACAAAATTGATCTCAATGAATTAAAAACCTACTTGATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68779 lncRNA downstream 47252 20065862 ~ 20073593 (-) False G51467
TU68775 lncRNA downstream 48014 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA downstream 48014 20065862 ~ 20072831 (-) True G51467
TU68785 lncRNA downstream 57309 20063108 ~ 20063536 (-) True G51468
TU68516 lncRNA downstream 270185 19825411 ~ 19850660 (-) True G51266
TU68847 lncRNA upstream 164419 20299051 ~ 20300666 (-) True G51518
XR_005639206.1 lncRNA upstream 233354 20367986 ~ 20382875 (-) True LOC120558923
XR_005639207.1 lncRNA upstream 233364 20367996 ~ 20382875 (-) False LOC120558923
TU68877 lncRNA upstream 306864 20441496 ~ 20441807 (-) True G51544
TU68904 lncRNA upstream 527721 20662353 ~ 20663577 (-) True LOC120558476
XM_039800206.1 mRNA downstream 79407 20004202 ~ 20041438 (-) True LOC120558880
XM_039800236.1 mRNA downstream 124505 19990916 ~ 19996340 (-) False etv7
XM_039800235.1 mRNA downstream 124508 19990918 ~ 19996337 (-) True etv7
XM_039800241.1 mRNA downstream 131850 19984434 ~ 19988995 (-) True LOC120558903
XM_039800277.1 mRNA downstream 297192 19822643 ~ 19823653 (-) True ngfa
XM_039800232.1 mRNA upstream 305 20134937 ~ 20142081 (-) True lad1
XM_039800271.1 mRNA upstream 9290 20143922 ~ 20149234 (-) True tnni1a
XM_039800276.1 mRNA upstream 20761 20155393 ~ 20157359 (-) True phlda3
XM_039800268.1 mRNA upstream 24022 20158654 ~ 20168891 (-) False csrp1a
XM_039800267.1 mRNA upstream 24022 20158654 ~ 20168891 (-) True csrp1a
XR_005639385.1 other downstream 414045 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 419394 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 420951 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1234092 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 2234512 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 186135 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 738076 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 749306 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 749306 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 749306 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile