RNA id: XM_039800254.1


Basic Information

Item Value
RNA id XM_039800254.1
length 1876
RNA type mRNA
GC content 0.41
exon number 4
gene id apobec2b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20306440 ~ 20309466 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctatttctgtaaatgcactAGGGTTATCTCTCTACTTACCCTGAGCTAtcgctctcttgctctctctccctccctctctttatcTAACACTGTCACCCACTTGTGCAAAATCATGGCCGACAGAAACAGCCGGGTTAGTGttaagaggaaagagaagaaggtagaaaacaaaacaaaggatgACAAGGAcaaagaaaaggagaaggagaaaaatgtgaaaaagccTGACAAACTTGTGAAAAAGCCAGAGAAGACCCCAGAGAAGACCCCCGAGCAGCCCAAGATGGATGAAGAGAAGAGGAATGGGGAAAGTGGAGGCGCAATAGGAGCGGAGGCAATAAACAGTGAAGAAAATGGAGAGTTTCAGCCCATAGAATTGCCACCGTTTGAGATTGTCACAGGGGAACAGATGAGCCCGTTCTACTTCAAGTTTCAGTTCAGGAATGTGGAGTACTCATCAGGGAGGAACAAGACCTTGCTGTGTTTTAGAGTGGATACACCAGGAGGCAGCACAGAGCCACTGAAAGGTTATATGGAGGATGAACATGCCACGGCTCATGCTGAAGAAGCATTCTTTCAACAGGTGCTCCCTATTGCTTCCCAAGAGTATGAAGTCACATGGTATGTATCATCCAGTCCTTGTGCGGCTTGTGCAGCCAAGTTGGCCAACATCCTCCAGCAGCGCAAGAAGGTCCGTCTCTGCATGTTCTGCTCCCGTCTCTTTGACTGGGAGGAGCCAGAGATAGTAGAAGGCCTCCGGGCTCTGGTGAGCGCCGGCTGCAAACTGCGGATGATGAAGCCGGTTGACTTCGTACATGTTTGGGAAACATATGTGGAGAAGGAGGACCTGACCTTTGAACCCTGGGAGGATTGTCAGGAGAACTATGACTACTATGTGGAGAAACTGGCTGATATCCTCAAGTAGATGTACTTCATGCACACGATGGACAAGATCTCCCCACTGACTCTCCACTGGTTGAACGTTTGTTTCTTGCAGTCTCATCTGACGGTGCAGATCAGTATAAGTTTGAATGAACACTCATGGcaacattttgtaatttttattttgataatttcATAGGGAGACACAAAATGCTTGATTGGCATTACTGAAGAATCACCTACTGTTGAAAAATATAATCATTTTTAAAGAAGAAAGCAATAACAGTAGACTAACTTACATTTACTCACATCTGGGGCCAGATGCATCAAATCCCCCAACTAAAACAGTgtgtacagtacacacaaagacagaaatatgCATAAGCATGTATATGCACCTCTAAAACATAATTGCGTATATATCTTAGTAATTTGTAGCTCTCATATTGAACCAGACTTTACAAAGAGCTTCACAAATCACGATAAAATCAAAAGATCATCGATGATAgctcaaatgtaaaaaaaagaaagaatgatAACAATGCATTACTCATAAATAGTTTAAAATTAAGTTTATGAATGCACTTTTGATTGGAATTTTACAGAGCACTGTGTAGACCACAATATAATAACAATCATTTAAATGATGTGTGGCAAAAGGTGTACGCATGTTTTTGGTGCGTACACATCGTTTATACATCTGGCCCCAGGTGTTTGCTTAAGGAGGATTAATAACATCTCCTGCAGATCAATACTTATGTACAGTGCATATAATAATTGCTAACAATAAAAGCTAACCATGTATATGATTGATGCTGCTCACATAAATAATGTTTCATATTTTAACAGTTCATCAATACAATGATGTGaattaaatatatacagttCTAACAGTATTGTGCTACAAAGTAATGTTCAGTGTCAGCCAGTCTGTTGGTTCAGGGTGCAATATCCCAATATATTTTAATTCCCATTAAATTTGGTACAAAACATT

Function

GO: NA

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 5774 20299051 ~ 20300666 (-) True G51518
TU68779 lncRNA downstream 232847 20065862 ~ 20073593 (-) False G51467
TU68775 lncRNA downstream 233609 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA downstream 233609 20065862 ~ 20072831 (-) True G51467
TU68785 lncRNA downstream 242904 20063108 ~ 20063536 (-) True G51468
XR_005639206.1 lncRNA upstream 58520 20367986 ~ 20382875 (-) True LOC120558923
XR_005639207.1 lncRNA upstream 58530 20367996 ~ 20382875 (-) False LOC120558923
TU68877 lncRNA upstream 132030 20441496 ~ 20441807 (-) True G51544
TU68904 lncRNA upstream 352887 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA upstream 352962 20662428 ~ 20663576 (-) False LOC120558476
XM_039800268.1 mRNA downstream 137549 20158654 ~ 20168891 (-) False csrp1a
XM_039800267.1 mRNA downstream 137549 20158654 ~ 20168891 (-) True csrp1a
XM_039800276.1 mRNA downstream 149081 20155393 ~ 20157359 (-) True phlda3
XM_039800271.1 mRNA downstream 157206 20143922 ~ 20149234 (-) True tnni1a
XM_039800232.1 mRNA downstream 164359 20134937 ~ 20142081 (-) True lad1
XM_039800215.1 mRNA upstream 1960 20311426 ~ 20316022 (-) True si:dkey-109j17.5
XM_039800262.1 mRNA upstream 7726 20317192 ~ 20321532 (-) False ccdc115
XM_039800261.1 mRNA upstream 7726 20317192 ~ 20320263 (-) True ccdc115
XM_039800238.1 mRNA upstream 15985 20325451 ~ 20328339 (-) True fkbpl
XM_039800269.1 mRNA upstream 100071 20409537 ~ 20431731 (-) True LOC120558914
XR_005639385.1 other downstream 599640 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 604989 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 606546 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1419687 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 2420107 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 11301 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 563242 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 574472 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 574472 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 574472 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile