Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039800268.1 |
| length | 893 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 7 |
| gene id | csrp1a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 20158654 ~ 20168891 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0007254 | JNK cascade | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU68779 | lncRNA | downstream | 85061 | 20065862 ~ 20073593 (-) | False | G51467 |
| TU68775 | lncRNA | downstream | 85823 | 20065862 ~ 20072831 (-) | False | G51467 |
| TU68777 | lncRNA | downstream | 85823 | 20065862 ~ 20072831 (-) | True | G51467 |
| TU68785 | lncRNA | downstream | 95118 | 20063108 ~ 20063536 (-) | True | G51468 |
| TU68516 | lncRNA | downstream | 307994 | 19825411 ~ 19850660 (-) | True | G51266 |
| TU68847 | lncRNA | upstream | 130160 | 20299051 ~ 20300666 (-) | True | G51518 |
| XR_005639206.1 | lncRNA | upstream | 199095 | 20367986 ~ 20382875 (-) | True | LOC120558923 |
| XR_005639207.1 | lncRNA | upstream | 199105 | 20367996 ~ 20382875 (-) | False | LOC120558923 |
| TU68877 | lncRNA | upstream | 272605 | 20441496 ~ 20441807 (-) | True | G51544 |
| TU68904 | lncRNA | upstream | 493462 | 20662353 ~ 20663577 (-) | True | LOC120558476 |
| XM_039800276.1 | mRNA | downstream | 1295 | 20155393 ~ 20157359 (-) | True | phlda3 |
| XM_039800271.1 | mRNA | downstream | 9420 | 20143922 ~ 20149234 (-) | True | tnni1a |
| XM_039800232.1 | mRNA | downstream | 16573 | 20134937 ~ 20142081 (-) | True | lad1 |
| XM_039800246.1 | mRNA | downstream | 24041 | 20120845 ~ 20134613 (-) | False | tnnt2a |
| XM_039800254.1 | mRNA | upstream | 137549 | 20306440 ~ 20309466 (-) | True | apobec2b |
| XM_039800215.1 | mRNA | upstream | 142535 | 20311426 ~ 20316022 (-) | True | si:dkey-109j17.5 |
| XM_039800262.1 | mRNA | upstream | 148301 | 20317192 ~ 20321532 (-) | False | ccdc115 |
| XM_039800261.1 | mRNA | upstream | 148301 | 20317192 ~ 20320263 (-) | True | ccdc115 |
| XM_039800238.1 | mRNA | upstream | 156560 | 20325451 ~ 20328339 (-) | True | fkbpl |
| XR_005639385.1 | other | downstream | 451854 | 19706679 ~ 19706800 (-) | True | LOC120559930 |
| XR_005639383.1 | other | downstream | 457203 | 19701330 ~ 19701451 (-) | True | LOC120559928 |
| XR_005639384.1 | other | downstream | 458760 | 19699773 ~ 19699894 (-) | True | LOC120559929 |
| TU68271 | other | downstream | 1271901 | 18880365 ~ 18886753 (-) | False | LOC120558627 |
| XR_005639183.1 | other | downstream | 2272321 | 17839544 ~ 17886333 (-) | False | zbtb46 |
| unassigned_transcript_227 | other | upstream | 151876 | 20320767 ~ 20320838 (-) | True | trnae-uuc_54 |
| XR_005639106.1 | other | upstream | 703817 | 20872708 ~ 20952518 (-) | False | LOC120558386 |
| XR_005639105.1 | other | upstream | 715047 | 20883938 ~ 20952518 (-) | False | LOC120558386 |
| XR_005639108.1 | other | upstream | 715047 | 20883938 ~ 20952518 (-) | False | LOC120558386 |
| XR_005639104.1 | other | upstream | 715047 | 20883938 ~ 20952518 (-) | False | LOC120558386 |
