RNA id: XM_039800277.1


Basic Information

Item Value
RNA id XM_039800277.1
length 1011
RNA type mRNA
GC content 0.54
exon number 1
gene id ngfa
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19822643 ~ 19823653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagacggcagccaatcacagagcaggACAGCAACAGACAGCTGCGGGGGACCACCATTGTCCACAGGAGTATCACAGGACCAGCCATGACAGGACCAAGAGGCCCCATCGGGCAGCTTCACACACCCAGGATAAGAGCCCTGTCGTTGGGCACTCTATGTCGGATTCCCCCCCTGATCCCTCCATCCCAGTGGTGGATCCCAAGCTCTTCACCAAGAGACGTTACCGCTCCTCGCCCCGTGTTGTCTTCAGCGAGGTGGCCCCATCACATGATGCCCTGGAAGGTGAGGGCTATGACATTGAAGGGGTAAGGGGGGTGAGGGTAAGGCGCAGAGCAGGATCGCGCATCATGCACCGAGGAGAGTACTCGGTATGTGAAAGCATAAATACCTGGGTGGGCAACTTGACACGAGCAATAGACATGGGTGAGAATGAGGTGACAGTGCTGCCCAACGTTACAATCAACAACGTGGTGAAGAGACAGTTCTTCTATGAGACCACCTGCCGTTCCCCTACGCACAGAGGCTCCGGGACTGCAAATGGGGGACGGACAGGGGGACGGGGTGGAAAACAGGGTCCAAGATCTGGCAACTCGGGCTGTCTCGGCATTGACAGTCGCCATTGGAACTCCTActgcaccaacacacacatattcgtAAGCGCCCTGACCATCTTCAAGGAACGGACAGCCTGGCGTTACATCCGCATCAacgctgcatgtgtgtgtgttctcagccGGAAGTCTTGGGCGGGACGTCTGGGGCACTGACCGGGGAGGACGACTCCTGAccacttaaaggacaattctggcgcaaaatgaacctaggggttaataacaaatgtgtaccgagtcgatcATTcactgggatatgttttcatgctaatcaaatgtgtctctAGGTTGAAACAAGCTGCTAaagctagctttcggggcagagggtgaatcgctattttataccactaacaaggctaaaaatatcaccacacttcaatggtagcataatgagggtcc

Function

GO:

id name namespace
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68493 lncRNA downstream 17104 19799205 ~ 19805539 (-) True LOC120558911
TU68468 lncRNA downstream 225135 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 363238 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 407448 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 594738 19227321 ~ 19227905 (-) True G51122
TU68516 lncRNA upstream 1758 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 239455 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 242209 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 242209 20065862 ~ 20072831 (-) True G51467
TU68779 lncRNA upstream 242209 20065862 ~ 20073593 (-) False G51467
XM_039800264.1 mRNA downstream 7325 19802866 ~ 19815318 (-) False LOC120558911
XM_039800263.1 mRNA downstream 7327 19802866 ~ 19815316 (-) False LOC120558911
XM_039800212.1 mRNA downstream 69204 19716768 ~ 19753439 (-) False camkvl
XM_039800211.1 mRNA downstream 69204 19716768 ~ 19753439 (-) True camkvl
XM_039800204.1 mRNA downstream 106332 19698028 ~ 19716311 (-) False uba1
XM_039800241.1 mRNA upstream 160781 19984434 ~ 19988995 (-) True LOC120558903
XM_039800236.1 mRNA upstream 167263 19990916 ~ 19996340 (-) False etv7
XM_039800235.1 mRNA upstream 167265 19990918 ~ 19996337 (-) True etv7
XM_039800206.1 mRNA upstream 180549 20004202 ~ 20041438 (-) True LOC120558880
XM_039800251.1 mRNA upstream 297192 20120845 ~ 20134632 (-) False tnnt2a
XR_005639385.1 other downstream 115843 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 121192 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 122749 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 935890 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1936310 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 497114 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1049055 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 1060285 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 1060285 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 1060285 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile