RNA id: XM_039800316.1


Basic Information

Item Value
RNA id XM_039800316.1
length 4799
RNA type mRNA
GC content 0.48
exon number 36
gene id cacna2d3a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19438628 ~ 19575574 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGGCAGCAAGTCCTGCTTCAGTGAACTGGGCACAGTGCATGACTTGATCCGACATGAAAGCTAAAGGCTAGCTATTATAGCACTGTATTAGAGCCCATgagtgggggagagagagagatagagagagagacggaaagAAAGGGAGAAGTATGGCgtaattcaacaacaacaataacagcatCGTCAGTAGCCTATGCTCAGATCCTGAGAGTaaggaggagagaaagtgagagagaaagtgggagagagagagggagagagagagagagagagagagagggagaggaagctAGTCGCATCACTCAAGAGGAGTAGGCGTGCTCTTGCTACATCGTTTGATGATCTCCCTGGTTTCCCCTGAACCTCCACTCTCTGCGGGTGAGGTCGGTCAAACAAAGGGGCTGAGCGGACTTTCCCTGTCGGAGGAGTCGAGCTCGACTTTCCGCCGGGCAGCAGAGCCGTGTGCACAGCACCGGTCAGCGGGGCCACGTCGCGGCACTTTGGATAACTCACACAGCTGTGGATCCTGCCGTTTGCCAAGGCGCATCGCTCATTCGCGTCCCGCACCAAGAACAGCTGAACACATTGCTATGAACGACTTAGTCAGACAGCATAGGTGACTTTTGATTTCCGCCaattttccctttttcttttcatttttggaTTCTctgaagggggggaggggggaggggggttaaTCCACGGTGGCAGCATAAGCCCAAAACTCGCTGGTATTTTTTGCCCAAGATGCAGGTGGATCGGAGCTGTGTGGTTTCCAGTGCGTGTCTGCTTTTACTTTTCTCAACTATAAGCTCCAGGGTCAGTGAGGTGGGAGGAACCCACCAAAGCATCCCTCCGTCCGTGGTGAAGCTGTGGGCTTCAGCTTTTGGTGGGGAGATGAAGTCCATCTCGGCAAAGTACTCTGGCTCCCAGCTGCTGCAGAAGAAATACAAGGAGTTTGAGCGGGCAGTGCGGGTGGAGGAGATTGGCGGACTGCGGCTGGTGAAGAGGCTGGCAGAGGACATGGAGGAGATGTTTCACAAGAAAGCCCAGGCAATGAAGAGACTGGTAGAGGCAGCAGAGGAAGCTCACCTACAGCACGAGGAGGATCCAGACCTACagTATGAATACTTCAATGCAGTGTTGATCAATGAGGTGGATGATGTGGGGAACAGCGTAGAGCTGGGAGGAGAATTCATCCTGCAACCCAATGACCACTTTAACAACCTGTCAGTGAACCTCAGTCTCAGCGTGGTCCAGGTGCCCACCAACATGTACAACAAAGACTCTGCAATCGTCAACGGAGTGTACTGGTCTGAGGCCTTGAATAAAGTGTTTGTGGATAACTTTGAGAGAGACCCATCACTCATATGGCAGTACTTTGGCAGTGCCAAGGGCTTTTTCAGGCAGTACccagGGATCAAGTGGAAGCCGGATGAACACGGGGTCATAGCTTTTGACTGTCGTAACCGGAAGTGGTACATCCAGGCTGCCACCTCTCCAAAGGATGTGGTCATCCTGGTGGATGTCAGTGGTAGCATGAAAGGTCTCAGGCTCACCATCGCAAGGCAGACTGTCTCCTCCATACTGGACACTCTTGGGGacgatgacttttttaacatcatCGCTTACAATGAGGAATTGCATTATGTAGAGCCATGCCTAAATGGAACTCTGGTCCAAGCAGATGTCACCAACAAAGATCATTTCCGGGAGCACCTCGACAAGCTGTTTGCTCAAGGCATTGGTATGTTAGACATAGCTCTGACTGAAGCCTTCAATCTTCTTGGTGACttcaACGAGACTGGGAGGGGCAGTGAGTGTAGCCAGGCCATTATGTTGGTGACAGATGGGGCAGTGGACACATATGATGCCATCTTTGCCAAGTACAACTGGCCAGACAGGAAGGTCCGCATATTCCCTTACCTGATTGGTCGAGAGTCAGCCTTCGCAGATAATCTGAAATGGATGGCATGTGCTAACAAAGGCTACTTCACTCAGATTTCCACATTGGCAGATGTGCAAGAGAATGTGATGGAGTATCTTCACGTGTTGAGTCGTCCCAAGGTGATTGACCAGGAGCATGACACGGTGTGGACTGAGGCCTACATCGACAACACTATGGATGATGGTCAAGGTCCGGTTCTGATGACCACAGTGGCAATGCCAGTGTTTAGTACCAAGAATGAGACTAGGAACCGTGGCATCCTGCTCGGGGTGGTTGGGACAGACGTGCCTGTCTCTGAGCTGCTCAAGACCATCCCCAAATATAAGCTCGGCATTCACGGCTACGCCTTTGCAATCACTAACAACGGCTACATCCTCACCCATCCAGATCTACGGCCACTTTATGGAGATGGCAAGAAGCGAAGGAAGCCAAACTACAGCAGTGTGGATCTGTCTGAGGTGGAATGGGAGGATAAGGATGACACGCTGAGAAATGCCATGGTCAACAGGAAGACAGGGACTTTCTCCATGGAGGTGAAGAAGAGTGTTGACAAAGGGAAACGTGTACTGGTGTTGCATAATGATTACTATTACACAAACATCAAGGGGACTCCTTTCAGtcTAGGTGTAGCTCTTTCCAGAGGCCATGGGAAGTATTTCTTCAGAGGGAATGTCACAGTTGAGGAAGGACTTCATGACTTGGAGCATCCTGATGTAGCGCTGGCAGACGAATGGACATACTGCAACACAGACGAGCACCCAGAGCACCGCTACTTGTCCCAGATAGAGGCAATCAAACTTTACCTCAATGGACATGAACCCCACCTACAATGTGACAAGGAGCTGATTCAGGAGGTTCTATTTGACGCGGTGGTGACTGCCCCTTTGGAGGCCTATTGGACGAGTCTCGTGCTCAATAAATCAGAGAACTCTGATAAAGGGGTGGAGATAGCTTACCTGGGCACAAGAACAGGCCTGTCCAGAATTAACCTGTTTGTGGTGCCTGACGAGCTTACAAACCAAGACTTCCTGACAGCTGAAGACAAAGAGGGGGTGTTTAACGCCGATCACTTCCCCCTGTGGTACAAGAGAGCAGCAGAACAAGTTCCTGGTACCTTTGTCTACTCTCTACCTTTCAACTCAGGATCAGAAAACAAGAGTGTTGTATTGGCCAGCACCGCCATTCAGCTTCTGGATGAGAGGAAATCACCCATAGCTGCGGCTGTGGGCATCCAGATGAAACTGGAGTTCTTTCAGAAGAAATTCTGGACAGCCAGCAGACAGTGTGCAGCATTGGATGGTAAATGCTCCATAAGCTGTGACGATGAGAACATTAACTGCTACCTCATTGACAACAACGGCTTTGTTTTGGTAGCGGAGGACTATACTCTGaCAGGAAAATTCTTTGGAGAAGCAGAGAGAGCTGTAATGAGTAAGCTTCTGCAGATGGGCTCTTTCAAGAGGGTCACTTTGTATGACTACCAGGCTCTATGTTGGGTTTTTTCAGAGAGCAGTGACAGTGGACACACACTGTTGGATcCTTACTTTGCTTTCTTCTCCGCTGTGAAGTGGATCCTGACTGAGCTTGTCATATTCCTGGTGGAGTTTAACCTGTGCAGCTGGTGGTACTCTGACCTCACAGCAAAAGctCAGAGGATAGGTCGGACCATGCAGGTACCATGTGACACAGAGTACCCAGCCTTTATCTCCGAGAGAACCATCAAAGAGAACTTGGGCAATGTTGACTGTGACGGCTGCATCAAGTCCTTTGTGATCCAGCAGATCCCCAGCAGTAATCTCTTCATGGTGGTGGTGGACAACAAGTGTGACTGCAGCATGTTTGAGTCAATAACCATGGACCCCATCGAAATCATGTATAATGAATCTCTTAAGTGCGAGAGGTTGAAGATGCAAAAGGACAGGAGGCGCCCAGATACCTGTCACCCTTTTCACCCAGAGGAGAACTCAATGGAGTGTGGAGGAGCTGTGGGTCTCACCCCGTCTCTTGTTGCAACACTGCTCTGCGTCCTCCTGGCACTGTTCTCTAGGTGACCAGAGCTGGCCACGCCTCTCCATCTACAACTTGACTTGAATCGGTTTGGCTCGGCATGCAAAAGAATCGCAACGATGccagagaaaaaaacactccTGCCCCTTATAAAACTGTGCCCAATTCCAACTCACCACCTATGCCCCAAGCCCTGAGGTACCTCCCTATAAGACACTTATTTGAAAGGATTGATAATAGATTACAGCTGCTAAGTAGTGATCATGACGGTGCTTTTGCAATATCACATGAGCTGCACAAAGAGGTTTTTGGGGAGATATAAAGTTTTGAACATAGAATGAATGCTAACAATGCACACAGTAGCTTAATAACTGCACACGTGGTCCAGTAAAAGCCACTGACACTAATACCACTATGTTCAGTCCTTTCAGGTAGCAGCTAAGGGCTGGGGTCTGTAGTTGGCCTTGGAACTGGGCATTAGAGACACGTTACACCCATGTGGAGAAAGACAGGTGCACCTTTTCCCTGGCCCACTTTGACTTTTCATGGACAATAATGATTCtgaagataaaaaataatactGAAGATGAAGATGATTATATGTGGCTGGGGTTGTAATAAAATGTTTGTCTAATGATCTTTTTTTCATGATGAGAAAATAAGTTCTAGTCTATATATGaagaaaaaagttttatttatgATTTGCAAGTGGTACCCATAAACTGTGACTATGAGATTTTGAGTCCTCTGACGTGAGTGGTTGTTAGTATTTGAGCTTTGCCTTATTGAACGATATTGGTCCTGTTTGTGtacttttgaaataaaatgatgtTTAAAATGTA

Function

GO: NA

KEGG:

id description
K04860 CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68349 lncRNA downstream 23433 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 210723 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 488192 18948833 ~ 18950436 (-) False kcnd3
TU68268 lncRNA downstream 509793 18922863 ~ 18928835 (-) True G51088
TU68243 lncRNA downstream 680127 18758042 ~ 18758501 (-) True G51069
TU68468 lncRNA upstream 20020 19595594 ~ 19597508 (-) True G51236
TU68493 lncRNA upstream 223631 19799205 ~ 19805539 (-) True LOC120558911
TU68516 lncRNA upstream 249837 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 487534 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 490288 20065862 ~ 20072831 (-) False G51467
XM_039800955.1 mRNA downstream 212797 19221020 ~ 19225831 (-) True capza1b
XM_039800735.1 mRNA downstream 360847 18945968 ~ 19077781 (-) False kcnd3
XM_039800736.1 mRNA downstream 360847 18945968 ~ 19077781 (-) False kcnd3
XM_039800733.1 mRNA downstream 360847 18945968 ~ 19077781 (-) True kcnd3
XM_039800734.1 mRNA downstream 361068 18945968 ~ 19077560 (-) False kcnd3
XM_039801235.1 mRNA upstream 12710 19588284 ~ 19602069 (-) True atp6ap1lb
XM_039801619.1 mRNA upstream 29182 19604756 ~ 19614597 (-) True b4galt3
XM_039801413.1 mRNA upstream 40072 19615646 ~ 19632023 (-) True bgnb
XM_039800432.1 mRNA upstream 61440 19637014 ~ 19649377 (-) True si:dkey-32e6.6
XM_039800190.1 mRNA upstream 75664 19651238 ~ 19662853 (-) True tktb
TU68271 other downstream 551875 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1552295 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1748868 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 3154772 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4584811 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 124199 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 125756 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 131105 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 745193 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1297134 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile