RNA id: XM_039800318.1


Basic Information

Item Value
RNA id XM_039800318.1
length 2045
RNA type mRNA
GC content 0.50
exon number 15
gene id uckl1b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17915256 ~ 17935671 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGTAGAGAGTaagtgagagaggagggaaaagTTGTGCTGTAGTTCCACACTGAGTGTGTTCTTTCTACCAAGCTGCAGTGCCTTCTCTCTCCCTATATTGCTCCACTGAATGGAAGAAACAGAAAGCTAAACAGATGTGTAAAGTTTCGTTTATCATCCAATTTGATTCCCCTCTATATtgcccaccctctctctctctctcgctctctctctctctctctctctggatgtGTTGTACCAGAGGGCAGTGCTGTTAAGTGCTTTATTGTGCgcgagtgtgtgtatatatactgagTATACCTGTTGGCAGTAATATAGGATTAAAACACAACTTACGGAGTACACACAGTGGGAGCCTCCATTAATTGTTCTCCAGTTATGAACTCTCTACCATCTTATTCAGGAGCTCGAATATCTGGCTGTTGGACTCTAAGATCTGATGGCAGTGGAGGTGGGGAGGGATCACTGGACCGGCTTCTCCCCTCGGTaagcacaggactttcacccaggaaaaggACTACCAGTCAGTGCAAGTCTGAGCCTCCTCTCCTACGCACCTCCAAACGAACCATCTACACCGCTGGCCGCCCACCCTGGTACAACGAACATGGAGCACAGTCCAAAGATGCCTTCGTCATTGGTCTGTGTGGCGGCAGCGCTTCAGGAAAGACAACCGTAGCCAGGAAAATTATTGAAGATCTAGATGTTCCATGGGTTGTACTACTTTCAATGGACTCGTTTTACAAGGTCCTGTCCCCGGAACAGCAGACTCGGGCTGCCAGTAATGACTATAACTTTGACCACCCTGATGCCTTTGACTTTGATTTGTTGACACACACCCTGCACAAACTCAAACAGGGCAAGAGTGTAAAAATCCCTGTCTATGACTTTACAACTCATGGGAGACAGAAGGAGTGGAAAACCGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGTCCTTTGCAGATAAAAAGCTCTTGCAGTTGCTGGACATGAAGATTTTTGTCGACACAGACTCTGACATCCGGCTGGTGCGTCGGTTGCGGAGGGACATTACAGAGAGGGGCCGAGACATTGAGGGTGTCATCAAACAGTACAACAAATTTGTCAAGCCAGCGTTTGAGCAGTACATTGAACCCACCATGCGCCTGGCTGATATTGTGGTCCCACGTGGTGGGGGCAACATGGTGGCCATCGATTTGATCGTGCAGCATGTCCACAGTCAGCTGGAGGAGAGGAAACTTCGCTGGGATATGGCAGCCCTAGCTTCTGCACACCAGGCCCAACCCCTCCCCCAGACCCTCAGTGTTCTTGAGAGCACACCCCAGGTCAGGGGCATGCACACCATCATCAGAAACAAGGAAACCAGCCGCGACGAGTTCATCTTCTACTCCAAGAGGTTGATGCGTCTGTTGATCGAGCGAGCGCTTTCCTTCCTCCCCTCGCAGGTCCGCGTAGTCCAGACCCCGCAGGGAGAGGATTATGAAGGCAGGACTTTCCACGGGAAGATGatcacaGGCGTGTCTATACTGCGAGCCGGGGAGACCATGGAGCCGGCTTTGAGGGCCGTCTGCAAAGACGTCCGCATCGGCAAGATCCTCATCCAGACCAACCAGGACACGGGAGAACCAGAGCTTCATTACCTGCGTCTACCGAAAGACATCAGTGAAGATCATGTGATCCTGATGGACTGTACTGTGTCCACTGGAGCTGCTGCCATGATGGCTGTTCGAGTCCTACTGgACCATGATGTTCAGGAGGACAAGATCCTGCTGGTGTCTTTGCTAATGGCAGAAATGGGAGTCCATTCAGTGGCTTACGCGTTCCCACAGGTCAAAATCATCACCACAGCTGTTGACAAGAAAGTCAATGATCTCTTCCACATCATACCTGGCATAGGAAACTTTGGGGATCGGTACTTTGGAACAGATGCACCCCCCGACTGGAGCGACGAAGAAATGGATGAGCCCAGTTACTGattgaattattattttatacaacTTATCGTGTGATTCAGGGCTGTGCCCGACAGAGG

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67884 lncRNA downstream 128896 17782688 ~ 17786360 (-) True G50779
TU67797 lncRNA downstream 231737 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 444581 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 663982 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 709627 17203747 ~ 17205629 (-) True G50561
TU67914 lncRNA upstream 41653 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 41653 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 70572 18003674 ~ 18024302 (-) False samd10b
TU67928 lncRNA upstream 107307 18040409 ~ 18041404 (-) True G50803
TU67935 lncRNA upstream 120917 18054019 ~ 18057349 (-) True G50808
XM_039800019.1 mRNA downstream 20174 17836973 ~ 17895082 (-) False zbtb46
XM_039800020.1 mRNA downstream 20174 17836973 ~ 17895082 (-) True zbtb46
XM_039800018.1 mRNA downstream 20175 17836973 ~ 17895081 (-) False zbtb46
XM_039800017.1 mRNA downstream 21683 17836973 ~ 17893573 (-) False zbtb46
XM_039800022.1 mRNA downstream 21745 17836973 ~ 17893511 (-) False zbtb46
XM_039800357.1 mRNA upstream 3392 17936494 ~ 17970913 (-) True znf512b
XM_039800428.1 mRNA upstream 41191 17974293 ~ 18010542 (-) True samd10b
XM_039800761.1 mRNA upstream 227072 18160174 ~ 18190215 (-) False b4galt5
XM_039800760.1 mRNA upstream 227072 18160174 ~ 18190215 (-) True b4galt5
XM_039799288.1 mRNA upstream 402299 18335401 ~ 18340591 (-) False spata2
XR_005639183.1 other downstream 28923 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 225496 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1631400 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3061439 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 947263 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1766671 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1768228 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1773577 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2387665 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile