RNA id: XM_039800345.1


Basic Information

Item Value
RNA id XM_039800345.1
length 2611
RNA type mRNA
GC content 0.45
exon number 16
gene id bcas1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9180687 ~ 9198974 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGTTGGAGCAGCGAGCACATCTCTCTGACACGGTGACAGACTATTGCTGTATTTTTTCAGGAGGATATCACTTGCTTGACTTGCAGAGGTGTAACAAGTTGAATGTCAGTAGAAAAGCCTGCGTCTGAAGGTCTCGACTAGGCAAAAACATGGGGAACGAAAACTCCAAGAACGCGGAGCTGACCGAGAATGGGAATATTCCTGGGAAGCATGGTAATGGATCAGTGAACGGCCTCTCTGCAAACATCACATCTAATGGATTGGAGATTGCTGttaacACTGAGACCATAGTCCAGCAAAATGCCGAGCCCCTCTCTTTAGAACTCGCCACAGAATCAACTCAGCCTGAAATCCTTGAAACCATCATTCATAAGAACCAGGTCAAGAAAGGTAATGAAGATCAAACAGATCTAAGTCTTCCTGCCACCAATCCACAGCCGGAGGCAGCTAACCTAAAGCGAGCGTCAGAATCGTTAACGGTGCCAGAGAGTGTGACTCTAGACTCGGGTCCCGAGAAAGAAAAAGCTCCTGAAAGCGACAACGGAGAGGACAGTAACCCAGAAGAGAATCCAGTTATGAACTTCTTCAAAACACTAGTGACTCCCAAAATAACCAAAAAGGAAACAGCTACTCCTGGTGCCACAAAAGACCAGTCCCAGATGGAGAACCAACCAGCAGTAACCACTACTGTTGCACAAGTATCTGAGCCGCCCGCAGCACCCAAAGGAATGTCTTacccaccaccacctcctccgGAGCCACCGAGAATGGAAATCAAGGGAGAACCAGCTGCCAAACCTGTCAAACCCACACCCAAAGAAGAACCCAAAGCTGCTGCAAAGGAAGCCGagtccccaaaaggaaaatcAGCCAGAGTTGCTCTGAGCAAATTCTTCCGTCCAAAGGTACTGCTAGGTGTCAAGGCATCCAAAGGCAAGGGTGCTTCAGCAAGTGGAGCCAAAACCCCGGCCAAGGCCAAGACTGCAGCAGTGACAATCAGAGATGCACCAGCACAGCCGGCGGTAGAAGTCCAGGAGACACCAGTGGTGCCACAGCCAGTTGTCGCTGTAGAAGTCCAGAGTGAAAATAATGTTGGACACCATGAGACAGCAGAGGAGGTGGCACAGCCAGTTGTAGAAGAGCAGGTGGTCGAGGAGGTACCACAGCCAGTGGTAGAAGCTGAGAAGGTGGATCCCTCAAAAGCCGGCACCCTGGAGGCTGCTGCAAAGCCAGAACCGCCACCGCCTGTTCAGGaagcaaaaaaaacagcctCAAAATcatccttcttttctctcttcaaGCCTAAAGCTGCTGATCCCCAGAAGGCGAGCCCTGCCCCAGCTGCAGCAGAGACAGTAAAAGCCAAAGAGGAACCCAAAGCAGCAGCCAAGTCATCAGAGGCGGTCGTAGACAACAAACCAGCTTCGGTGGCCCCCCAAGCTGGAGATGATGCAGCCAATGTGCCCAGGAAACTGGAGAAGAGGAACTCAATCCAACTGTTCTTTAAACATCTGGGTCAGAAACGTAACTCGACAGATGCCGGGGTCCAGACAGAGCCGGTCCCTGTTGCTCCAGCAGCTGAGAAGGCCAAATGAAACCAAAGCCAACAATACAGTTTCCCTGTACAgaccccccctctctttcttgcTCTTACTCAATCTttatctctcactctgtctcatCTCCCTTTCAACTCTTATTGAATTACTTTaactccttttttatttttattttgttactgTTCAGAAGTTACAATATGGAAAGAAAAGTGACACGAAGGGTAAGAGCATGTTGTTGAAAGACGAAGAGTGGGCAGGTAGTTGAACATGTGGCGATTTGAAATGGTCCAAGGCGAGGTTATTgagatacatatatatatatttatatattttttggacATTTAAATGTCTTGACACATATAGCAATGTGAGTGTGAAACCTTTTCTACAGACATTCAATGTGACTTCTCTCTGTTCTTGCGACCTAACACACCGGGCTTATGCAACAGACGGTACCATGCTTTGCTTTTAGCAATTACTTTGTCAAAAGGGTTCTATTTTTACAGTTCACACCAGAAAAAAATCACGCAGTTGTGGCTATGCAGAGGTTAATATGAAATGACATTGAAATAAGTACTTAAATCTATatgacattaaaatgaaaaGCTCCTAACAGAGCTGATGAGAGGAGCATTTCCGTATATAACAAATTGCACTTACAGGTTTTGTAACTTTATGAAAGCTATATGTAGACTAAAGCGCACACGTATCCTAACAGTCATGTATTGGGCCATATGGGAAAATCACAATCTTTACTGTTCTGTGGGGAACTGATTGTTAAGTGTAACAAATTCATCTGAGGTGGCAAAATGGTGTCGCTGTGCCACTGTGTCCTTGTGGTATGTTTTGCAGTCGTCATAAATCCCAGTTGATTAGCTTTTCATTTAACTGTAGCACTTTGTGTCATGGAATTTAATGGAAGTCTTATGGTGTTAGTCATTCGTGTTTGGCATGTGTGCAATTAATATCATTCTTATGTTTGCCTAAATGTATGTATGCGTGCATGTGTAACTTCAGCTATCTCGAagacaataaatatgttcacaGTT

Function

GO: NA

KEGG:

id description
ko00910 Nitrogen metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64434 lncRNA downstream 91944 9077075 ~ 9088743 (-) True G48255
XR_005639096.1 lncRNA downstream 434175 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 472722 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 475976 8704391 ~ 8704711 (-) False LOC120559289
TU64267 lncRNA downstream 526368 8611698 ~ 8654319 (-) True G48128
TU64476 lncRNA upstream 11950 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 83322 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 85943 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 180026 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA upstream 180026 9379000 ~ 9385221 (-) False LOC120558858
XM_039801629.1 mRNA downstream 5473 9168882 ~ 9175214 (-) False znf217
XM_039801630.1 mRNA downstream 5473 9168882 ~ 9175214 (-) False znf217
XM_039801636.1 mRNA downstream 5554 9168882 ~ 9175133 (-) False znf217
XM_039801635.1 mRNA downstream 5947 9168882 ~ 9174740 (-) False znf217
XM_039801633.1 mRNA downstream 5954 9168882 ~ 9174733 (-) False znf217
XM_039801181.1 mRNA upstream 88574 9287548 ~ 9292138 (-) True cbln4
XM_039801180.1 mRNA upstream 113912 9312886 ~ 9354630 (-) True LOC120559472
XM_039800160.1 mRNA upstream 170987 9369961 ~ 9371630 (-) True irx7
XM_039800159.1 mRNA upstream 181174 9380148 ~ 9408403 (-) False LOC120558858
XM_039799968.1 mRNA upstream 228626 9427600 ~ 9519455 (-) True plekhg5b
TU64005 other downstream 993136 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1074492 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1293837 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1681885 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1693627 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 491556 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 509357 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 826020 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1443745 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2689967 11888941 ~ 11891046 (-) False srxn1