RNA id: XM_039800357.1


Basic Information

Item Value
RNA id XM_039800357.1
length 6921
RNA type mRNA
GC content 0.44
exon number 18
gene id znf512b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17936494 ~ 17970913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGACCCAACACACATTACTGTAATACTGTACACGGCCGCCGAGATAATATCCGTATAAAAAAGCGAAATAATCCCGAGGTAAGGAACCGAGGAGTGAACCAAAACCGACCGAGGTTTGGCGTTTCTGCTCATTTTCCTTCGCTTCGTTTTCTTTTACTCTAACCAAGTGTTTCGCCGCCGTCGAAATTACTGCACTAAATATATTTGTGTGCCTCCCTTTAGCTCCAGCCAGcgcaaggattttttttttactcctccTTCGTAATAAAGTCGCCATTTTGCTTCACTGCCTATAAACCATCCCGTATTCTAATATTTTCCTCAAGGAGTCGAGGACCTACCTATATTTTCCTGGCTATTCCTTATATTTCTGGATTGTTTAACGAGAAGACAGAGGTTGAAGAAGTGCCTCGTGGTGTACATATTAATGCAGGAAAGGAGGGGGGCAAGGCAATTGGAAACTGGGAATAAGGTGAAAGTATCCAGGATTTATTTTCATGTACAGACGAAATTGTCATTTCTCTTCTCCTGCcctgctctttttttcctcccacATCGTCGTGGTCCGCAGAGTGGGGGTACAGGACGACAGTGACGACTGTCCACTTCCTTTCAGATCCCCAACCCCAGTCTGACCGGTCCTTGACGCACAGCAGGTGTGATTGCCATGTAACATAACATTGGTGGAAAAACGCCCACTTCGGTGTCTGTCTCCTGACCCCCTCCTCCCTCACGTGGGTGACCCGGGGCCACCCGGCCCCTAGTGCTGGGTGATTGCCCGAGAGTTCAGGCATGGAGAGCCCAAGTGGCCCCAGGCTTGGGAAGCTGTCCTCATCAGGGCTGCCAAGGGGCCGGACCCCCAAGCATGGACATCCCCAGGAGCCTGTCAGAACCACGCCAGGCccggaaaacaacaacaaacacaGTCCGGTGTGTGATGAGCCAGCAGAGGTGAAGAGGAAAGGTCGCCCTAAAGCAGAAGTGCAAGAACTGAGAAGCATCCCTGCCCATATGATAGTACAATGGAAGGAAGAGTTTAAGCGCCGCTCCAGGGTTAAGTGTCCGTGTTCAGGCTGCTGGTTAGAGTTTCCCAGCATCTATGGCGTCAAGTACCACTATCAACGCTGCCAGGGGGCCACCGTAGCTGAGAAGCTGAGTCATGGCTGTCCCTACTGTGAGGCAGTGTTTGCCACAAAGGTGCGCCTGCAAAAGCACAAGTTGTGGAACCACCCAGACAGGGTTAATATGGAGCCCAAGGACGAGCAGCCTAAGCTTCAAAAGACCACTGTCAAGTCCAACACCAAGAAAAGGCCCATAGAGAACAGTCCCCCCTCTACGATGTTCTTCAAAGTGAAAAAGACCCAGGAGGTGTCCATGCCCTCTCAGAACGGGGAGCTGGCCCACGGGAAGAGTGAGAGGAAACAGCACAGCCACACTCAGCCTTCACAGCAGATTCACCAGTCCCAGCCAGTCCAGCCTCAGTCCCAGGAGTCTCACAGCACGTCGTCTGATGCGGAGGGCAGTGAAAGTGAATGGGACAGCCTTCCCCCTTCTTTCCCTGACGAAGACCCAGAGCGAATGAGGCACAGACGTAAGCAGAAAACACCTAAGAAATTCACTGGAGAGCAGCCTTCAATATCTGGAACATTTGGATTGAAgggTATGACTAAGGTGGAGGAGAAGCTGAAGGCTGGCCGTGCGAAGAGATCAGAGGGGACTGGGTTCAGTGAGGAGCCCCAGAGAAGACCGACTTCAAGTCAGTCCTCCAAGAAAGATCCAGCTACAAGCAGCTCTGGTGCTGACACCCAGTGGCAGCGAGCAATCCATGAGCGAGGTGAAGTAGTGTGTCCCACCTGCTCCATCGTCACCAGGAAAACAATCCACGGCCTCAAGAAACACATGGAGATTTGCCAGAAGCTCCAGGATGCCCTGAAGTGCCAGCAGTGCCACAAACAGTTCAGGTCCAAGGCCGGCCTCAACTACCACACCATGGCTGAACACAGCACCAAGCCCTCGGGGAGCGAAGGCCAGACGGGCGACAAGCACGAGGAGAGAGAACGGCTGCGCAGAGTGCTCAAACAGATGGGACGAATCAAGTGTCCTAGTGAGggCTGTTCAGCCCACTTTTCCAGCCTGATGGGCTACCAGTACCACCAGAAACGTTGTGGAAGAGAGTTCTCTGATGATGAGAAGCCTGTGTTTCTGTGCCAGCACTGTGGAAAAACCTACCACTCCAAAGCTGGCAGAGACTACCATGTGCGTACCGAACACTCCTCAACTATCACCACCACCATGacagccaccaccaccaccactaccaccaacaacaacaaggacATTATCACtgacaccaacaacaacaccGGCAAAGAGAGGGTGGTCTCTGAGGAGTCTCCATCATTACGCATAAAAGAGCAAAGCCAGCCTGAGAAGAAGGATTGGCAGGAGAAAGCACCATCCAGCCAGCCTAAGGAGAAGGAAATAGAAGTGAGGGACAAGGACagggaaaaggaaaaggagaggGAGCGAGTCAAAGAAAAAGCAGCACAAACTGTGAGCCAGGGGGATGACTTTGAACGGACCCCCAGTGGCAGAGTGAGGCGCCGGTCAGCTCAGGTGGCAGTGTTCCACCTGCAGGAGATAGCAGAGGATGAGCGCAAAGACTGGGGCACCAAGCGCCGCATCAAGGATGACCTGGTGCCTGATAGCAAGAGGTTAAACTACACCCGTCCTGGCCTCCCTAACTTCAGCCAAGAGCTATTAGAGACCTGGAAGAACCAAGTCAAGGAGAAGGGCTTCATCTGCTGCACCAATGAAaACTGTGAAGCTGTCTATTCCAGTGTATCAGGACTAAAAGCCCACCTTGCCAACTGCAGTCAGGGTGGTGGAGAACTGGGAAAGTACACTTGTCTCATCTGTCAGAAGGAGTTTAGCTCAGAGAGCGGTGTGAAGTACCACATCAGCAAGACACACTCACAGAACTGGTTCCGTGCAGCAGCCAGTGAAGTGGTCTCCAGTACCAAGAGTAAAGCGCCGGAGAACAATGGGATCAAAGCTGAGGTGAGGAACGGTGCCACCACTGGTAAGAAGAGGGGCCGCAAGCCCAAAGAGCGGCCCTCTGTGGTTGCGCCTCACCAAACACAAACTGAAGCACCAACCACTACTCAAAACTCAACCCCTGCCGTGACCCCTTCATAGTCCCCCACCCTGATCCCCAACCCAACGGACAGTGCTAATTCAGGCCAAAACAGACAACCCATCCCCTCCTCCGCCAGACGAAGCAAACCCAGGAGGCTGTCATTGTCAGAgtagctctgcttttgttgaCCCAGGAGCCAGGGAGGATGCTTACTGTAAATGTTGTGCCAGGAAGCTAAATGACCTTTCTAACTCCACAAGGACTTGGCACTGAGAAGAAAGCTAAATCAACCCTTAAGAAGTAAAACGTTTAGTACAGACTTTTTGAAATCCCAGAGTTAATGTGTCTACTGTTATAAAAATACTCATGTAACAGTAGTGTTTTATTTCTCCATTCcacttttgtctcctttttaaTGCACACATTTCAGTTTCTGTACTCACAGCAGAGGTGTCAATAGtaatcaaaaataaaatcctGACTTCAACATAGATAGCATTTTCTAAACAGAGGTAGTATTCCAAACAAATGCAGAGTAATTCTCTCTACAATAttcatgttgtgttttattcatgAGGTTTTAAAAAGGATATTCTATTAGCATAGTGAAGTCATTTATTGATAGCTagtgttttcacatttttttccacagatatactgtactgtgtaCATAAAtaatatctatatctatatatctatatactcAAAGCAATGATGCCAGCTGTCATTTTAAAGCCTGACACGTCCAACTGGATCATGAGCAGTCAGAATTTTTTGCAGTGTGTGCTGTAGTGCAATTATGCTTTGAacttgatttctttttctggtataattttcttgttttttacttttcagGTTTTAAGTAAGAAATTCTCATATAAGCTAAAATGTTGGTCAGTTGTTAATCATATTCCACTCTGTTTTTCCTACAGCCATGTGGCTCACTTCagtgatatttatttttatttgatctgCATCACATGACAGTGAAAGGTATCTGCTTTGACGACCATGAACAAGTGTCAAAAGATTGTTTCCACAGTTCTTTTACACTGAAGTTAAAAAGCAGAATACCCAAAAAGTGATTGTTTGAGATTTCCATCTGTAGGGTATAAGTTAATACTTAATATGGCATTGTTTAAttgattttaaacaaaaaacttGAAGCATTCTGTCTAAAATAAGACTGGCAAAGCTAAATGTTGGACAGAGGGATGAATTTTGTGTGAAGCTTGTTGCACCATTGCAGCACAATCAAATGATGTGATACGATTTTTAAGGAGGCCATATTTTGGCTACTGCTTTAGCTTGAATCAAAGAGCTGAGGAGAGAATACAAATATCTTTTATAGAGAGGGTGAGGGAAATAatcttttattaaataaataaaattgcaaaCGAAGATTCAATTATAATGATGTATATGAATTAATTCCTGGATGCTCAAAGTTATTGCCTTGCACTTTAACCCTTAACCCCTCTCGCTTGTCTCTTGTATTTTTGCACTCCAGGAGTATTCAACCTAACCTAGTGGCTGTCAGGCACAGAAGTAGGAATATTTTACTCTGATGAAAAATTTTAACTAGAGAAAAACTAAATTTGTCTTTACATGGGTAATGAGCAGCCTGGTTAACTCTTTCTAAATAGTATCTGTAATCAAACATGACCGTATGATTATGACTCACCACACAAAGCCATAACAGGTCTTGTTGAATTTTAAGGCTGCTCTATCCCACTTGAAGTTAGTTTAGCTGcagattaaaaataataataatccattattattaaattacttTTCAAGTCTGAAATGTGTGCAATTTAGAGAATATTTTCACTTTAACATGTTTAAAGTAGATACTTGAATTCACAGTTATATTAAAGATTTGAGCAAATGAAAACTCCATAAATATTTGATTTATATTTGGAGTCTATGTCCATAAAAATAATGACTTCCTTGCTTAAAAAGAAAACGACAGATCATAAATCTATTTTATATTCTCTTGTGTGTATTACCCATATAGCAATCTGATAGCTTTGAATACAGTTGTGATGTGGGGATATTCTGGTGAGGTAATAAGAGTGCTTTACTTGTCACTCTACCTTAAGGACCTGAACTCAGTTAAGTCCACTAATCCATCCTGCCACTTTCTCCTTACTGGCAAGTCCTCTGAATTTTTTGCACCAACAAATCGTTGTCATTATTCAAATCAAGGACTGATGTCAGCAGAACATGTTCAAGAAATATGTGTCCCAGGTGGTGTCATCCCTACGCTGTGACCTTTAATATTGTGAAGCAAAGATTTGATCTGAATTCCTCCATTTTTAATCAACTGATGGTGGTTATTCAAGTGGGAATGATTATGCATGTGTCTATCCCTATTAGTGGGATGGACCTTTATCTTCTATCCAGGTTCAACCGATGGAGAGGATAAGAGTTAGACAAGCACTGATTGGTCCTTGGACCTTTTCAATATGAGTTGTCCAGacctttatgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaaaacAGTTAGCACCTTTGTAATGACTGGATGTCAAAAATGGTAACACTTTTCGTTGAGTGTTATGCTGTGGCACAGAATCAGTTCATCAGCTGCTTGTTACACGTTTCATTAATAACGTCACATTGACTGTGTTTACCTGACAAGCTTTGGTGTTGCAATATGATGGTTAGGCACTGCTTTTGACAGTgggtattttatattttatcacACCCTTTACTATCTGTCTTCCTATGATGTGGAAAACACATATCTATCCCGCAGTGTGAGCTAACTGCAACATCTTTAGAGTACAGCAATACACCATAATTAGCTGGTTTTGTTGGCTTGCTGATATTTTGATATTGATGTGTCTTCTCAAAATTGTATGGCTTTTTTCACTCCCCTacttttattagtttgcttTGAAAATGCTTTTTACATATTatgaaatctaaaaaaaaatgaattaaaaaaaaaaggttgaaaaaattTGTAGACCACAAAGAACATTGTAAGCCTGTGTGTCGGCATACACTGTTATTTTATCCATTTTGATGATGCACATAAATTGAGCTTTTTCAGTACACAATGGCAAACACATTGAGAGAGTCCTTTATTATTATCTATTCAATAAGGGACAACAAGGcataatgtatgtgtgtttgtttcagtaTTTAGTGCACTTACTATACCATGAAATAGGCTTGAAATAGGCGTGTTATTGGAGCTTTCTAGTTACCCtgactgtgtgtggtgtgactTTTGTACCTGGGGAAACAGCAGGCTCAAGCGTCTTCCCTTTGTCAGCAATGTTATTTCCAAAACCAAGGTTAATCCTTAGAAATCCAGCCTGAGACTTTTACCCTTTTATTTGGACAACAGTGGTTCGTTTTGTATGCTACCTGCTTCAAAAGCAGGAAATGGCATCCACCTCTGTCGTCTGGGCCATTGTGATGAAACTGTGGAGAGTTTTAAGAGATAATGTTGTAGCTCATAACTGGTTATGATATATAGGTAACAGGTGAAATGAGACTAATAATGTATTAAAgatttccatatctgaaattaAGCTGTATAGAACCTAGGAGACATCAACATATCCTTAGAGAACTGTTACAATTTTTCTCCCAAACTTGTTGTATTACCTGTGCATTAGTATCCCTCAACTAATTAATAAAAGTTTGTTGACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67884 lncRNA downstream 150134 17782688 ~ 17786360 (-) True G50779
TU67797 lncRNA downstream 252975 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 465819 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 685220 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 730865 17203747 ~ 17205629 (-) True G50561
TU67914 lncRNA upstream 3842 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 3842 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 32761 18003674 ~ 18024302 (-) False samd10b
TU67928 lncRNA upstream 69496 18040409 ~ 18041404 (-) True G50803
TU67935 lncRNA upstream 83106 18054019 ~ 18057349 (-) True G50808
XM_039800321.1 mRNA downstream 823 17915256 ~ 17935671 (-) False uckl1b
XM_039800318.1 mRNA downstream 3392 17915256 ~ 17933102 (-) True uckl1b
XM_039800319.1 mRNA downstream 3393 17915256 ~ 17933101 (-) False uckl1b
XM_039800323.1 mRNA downstream 7324 17915256 ~ 17929170 (-) False uckl1b
XM_039800320.1 mRNA downstream 7503 17915256 ~ 17928991 (-) False uckl1b
XM_039800428.1 mRNA upstream 3380 17974293 ~ 18010542 (-) True samd10b
XM_039800761.1 mRNA upstream 189261 18160174 ~ 18190215 (-) False b4galt5
XM_039800760.1 mRNA upstream 189261 18160174 ~ 18190215 (-) True b4galt5
XM_039799288.1 mRNA upstream 364488 18335401 ~ 18340591 (-) False spata2
XM_039799289.1 mRNA upstream 364488 18335401 ~ 18340457 (-) True spata2
XR_005639183.1 other downstream 50161 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 246734 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1652638 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3082677 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 909452 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1728860 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1730417 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1735766 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2349854 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile