RNA id: XM_039800388.1


Basic Information

Item Value
RNA id XM_039800388.1
length 3893
RNA type mRNA
GC content 0.51
exon number 18
gene id agap2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7900773 ~ 7943081 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcaaacCTGCAGAGGAAGCTGAGCCGCACGTTGTCGTGAGCTGACTTTTTGTGGTCGGgagcgaaagagagagacaccCTTGAGCAGCCGGCGTCTCGTTTTTCTGCTGCGTCTTGTGTCTTCAAGTCTTCAAGCGTTCATCTTGTGGAACAAACGAGCCGGGAGTTCAAATGGGCTGAAGCGAGGCATTTCGGCTTCAGTTTACCAAGAGATCCATGCGTCAGGATGAGCAGCAACAGCAAATCAGTAAACTCCACTGCAATAAAAGCAGAGATCAAGAGGCATGAATCTCTCCAGAGTGCAATCAACAGACTCTCCAAGCAGTTTGAAAGAGTCGCGGATCAACAGCTGCGCTCAGGTCTTAAAGTTTACCTCCACAGCATTCAAGtAAATATTGCCAACAGCCAGGAGTGGACCCTGAGCAAATCCGTCCCAGAGCTCAGACTGGGCATTCTGGGAAGTCTAAAAAGTGGCAAGTCAGCGCTGGTGAACAAATACATCACAGGCAGCTATGTTGCACTTGAGAAGCCTGACGGTGGCCGGTATAAAAAGGAAGTGCTGGTGGACGGACAGAGTCATTTATTGCTGATCCGGGAGGAAGCTGGGCCGCCTGatgcacagttCAGCAGCTGGGTGGACGCAGTGATCCTGGTCTTTAGTCTGGAGAACGAGGGCAGCTTCCAGGAGCTCTACCAGCTCTACAGTCAGCTGAGTGCCCAGCGCACGGACATCCCAGTCATAGTGGTCGGCACCCAAGATAAAATCAGCAGCACCAACCCTCGAGTGATTGAGGATCAGAGAGCCAGACAGCTGTGTATCGACGTGCGTCACTCGCTGTTTTACGAGACCTGCGCGACCTACGGGTTCAACGTCGATCGAGTGTTTTCAGAGGCTGCCCAGAAGATTGTCGCTCAGAAGAAGCAGGCGGCACTGCAGGCCTGCAAGTCTCTTCCCAACTCTCCCAGTCACTCTGGAGGCTCCACCCCTGGATCAGCATCACTCCCCGGCCAGGCCAGTAATGGCCCGAGTTGTGGCTACGCCTACTCCCTGCCCTCCACCCCTGTGATCGGTCATCGAGATCTGCGGGTTGCACAGGCAGACGGGGGAGGCAGTGTCACCTCCCGTCCGCTGAGGGGCATCCCCAGACGGCCCTCCCTCTTTAAGAACCGGGACCCAGATAAGAAGTCCGGTGATCCTAAAGGAGACCCAAGCAGCGCGCGGGGCGTTCCCATCAAACAGAGCATCCTTTGGAAGAGAAGCGGCAGCTCTCTGAACAAGGAGTGGAAGAAGAAATACGTCACCCTGTCCAACAATGGCACACTGTCCTACCACTCCAGCTCCAGTGACTACACGCAGAACATCCATGGAAAGGAAATCGACCTGCTGCGCGTGACAGTCAAAGTTCCCGGGAAACGTCCTCCGAGAGCCGTGGCTCCTGCGGGGCCCTCACCTGTCCCCCCCGCCTCTGCACCCGGTGTCAACGGGCTGAGTAAGGAGCCGGCAGCCGCCGATAGCACCAGTACAGTTCCTCAGCTGTGTCCAGCCACTCTGTCCGTGGTTGATGATCGGTCAGGTGGTCTGTTGTCTCAAGGAGGAGACAGAGCACTCCAACGCTGCCCCTCCTCATTGTCCACCAAAGCACAAAGTGTCGATGCCCTTGAAGGAGCAGCCACTGGAAAGGATCCCGGCCAATCATCTCCCATGACCGACAGGAAGAAGAACCGGAGGAAGAAGAGCATGAATCAGAAAGGAGATGCAGCCGTTGGTCAGGCTGAAGAGGAAGAGAATGCAGACTTTATCATAGTGTCGTTCACGGGGCAGACGTGGCACTTTGAGGCTCCGAGCCTGGAGGACCGGGACGCGTGGGTGTCGGCTATAGAGAGCCAGATCCTGGCCAGCCTGCAGTCCTGTGAGAGCGGCAGAAACAAGGCTCGGAGGAGCAGCCAGAGTGAGGCTGTAGCGCTGCAGGCCATCCGCAACGCCAAGGGCAACAGTCTGTGTGTCGACTGTGAAGCCCCGAATCCCACCTGGGCCAGTCTCAACCTGGGCGCGCTGATCTGCATCGAGTGCTCGGGGATACATCGAAACCTGGGCACTCACCTGTCCCGCGTCCGCTCGCTGGACCTGGATGACTGGCCCGGAGAGCTCACACAGGTCCTGGCTGCCATCGGAAACCACATGGCCAACAGCATCTGGGAGAGCTGCACCCAGGGCCGGACCAAACCCACACCAACGGCAACACGTGAGGGAAGAGAGTCGTGGATTCGTGCAAAGTACGAACAACGGGCGTTCGTGCCGCCTCTTCAGCCGGCCCCGGCTCCAGGCGACGGCATGCCCATGTTGCTGCTGTCTGCGGTGACCGAGAGGGATCTGCCCAGACTGCTGCTCCTTCTGGCCCACAGCACCAAGGAACAGATCAACGCTCAACCGGCCGGGTCGACCGCGCCGCCTCGCTCGGCCCTGCACGCCGCCTGtcagctgggagatgtagtcATGACCCAGCTGCTCATCTGGTACGGAATCGACGTGAAGGCAAAAGATAGCCAAGGCCAGACAGCCATGAAGGTGGCCAGAAAAACAGGGAGCAAAGGCTGCATTGATATTTTGCTTCAACACGGCTGCCCCAACGAGACGTCCCCCACCACTGCCACACCCGTCCTGTCCCGCCGGTCCAGCACTGCCAGCCTGGGCCGAACCAGCTCCAGGAAACGGGTGTCGTAGCGCCAACTGAAGACGCCACCACACGGAGGAGCCGTTGACCTCTGGAAGATGCTTATTGTTTAGAAACCTTTTGAAATCATGGATACTTTTGGAGAGGGGGCGTGCTTTAGGGAAAATGACAGGACTATATCATAGTACTAAGGATTTAAAcaaaaacgagaaaaaaaatAGCTTCTGAAGACTGAACAACATATCAAACAACTTAAAAGCAATATTCATTCAATTTCTTGATGACAGATATGTTGCTGAAATGCCGTGTTGTTGTTGACCTCATTTCAAAAATGACTCAAGTAGAACTTTGTAGCTGTCTTCTGTAATTTTAGAGCAGACAAACTGCTTCCTGTTTCACTTCTTCCAGAAGAAGTGCAATAATCCAACTATGATGATGAAAAGCAACAAGTTTTAGAGCGGACCGTGTCGGACGACTGTACGGTCAATACACCGAGAAGGGtgctgcttttatttcaaatttgTTGTGACCGGACCAAAACGGCCCTTATTTCCTTTTGGCTTTACAAATAAAAGCTACAATATGTCATGTCGTTAGTTATGTGTGCCTGTCGCAGCAGTATAAAGGCCAGTTTGGCCGACATAAATGGGTTTTTCAGTGACGAATCAGCTGAAATAATTCTGCTTagactagaaaaaaaaaatgaatggttTGGAATATGTCAGTGTTACTCTCACAGGTCAAAGATATGGCGTTTTAATATAATGTAAATGTACCTATACTACGTACTTAATGTTAAACTCTGTAACCAAGACACAACTGAAAAATCAAAGACTCAATTTTGTAAATGATTTCTACTGGTAGTTTTGAAAATATGTCAGACTTGTGTTTTTCATTGCCTcttatagtttgtttttttattttttattatcctaCATGTCATGAAAGCATCAACCAGTAAACAAAATGCTTTTACATAATGTGAACATGTGGCTATTTGTTAAGTTTTATTTGGGATGGCCCAAACGACTACATAAAGACATTATTGCCGTTCATATTACTGTTGTGTAGGTCGTTCCCCGGAGTTTACAGTGAAGTATGAAGAGTTGCAGGTGTCATAGTTATTTCTGACACTTTGTGGGTTGTGTGAATCTCTCATGAGCTAAAAGAAATGGTTACCGgaataaaataaacttttttttaattagcattATTAGgatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63874 lncRNA downstream 277294 7607891 ~ 7623479 (-) True G47837
TU63883 lncRNA downstream 295470 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 392348 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 392369 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 399853 7500657 ~ 7500920 (-) True G47817
TU64046 lncRNA upstream 48788 7991869 ~ 7994732 (-) True G47956
TU64064 lncRNA upstream 104218 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA upstream 104741 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA upstream 104741 8047822 ~ 8050421 (-) False G47972
TU64020 lncRNA upstream 235574 8178655 ~ 8179100 (-) True G47935
XM_039800389.1 mRNA downstream 2480 7889827 ~ 7898293 (-) True LOC120558974
XM_039800375.1 mRNA downstream 56374 7777787 ~ 7844399 (-) False spryd3
XM_039800373.1 mRNA downstream 57973 7777787 ~ 7842800 (-) True spryd3
XM_039800376.1 mRNA downstream 57973 7781296 ~ 7842800 (-) False spryd3
XM_039800374.1 mRNA downstream 57979 7777787 ~ 7842794 (-) False spryd3
XM_039800398.1 mRNA upstream 101880 8044961 ~ 8100721 (-) False nckap5l
XM_039800397.1 mRNA upstream 101880 8044961 ~ 8082682 (-) True nckap5l
XM_039800396.1 mRNA upstream 101880 8044961 ~ 8069976 (-) False nckap5l
XM_039800401.1 mRNA upstream 157858 8100939 ~ 8112235 (-) False kansl2
XM_039800403.1 mRNA upstream 157858 8100939 ~ 8112235 (-) True kansl2
TU64023 other downstream 13923 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 401971 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 413713 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 864398 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 1095067 6804141 ~ 6805706 (-) True G47638
XR_005639386.1 other upstream 162980 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 1747449 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1765250 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 2081913 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2699638 10642719 ~ 10654818 (-) True G48697

Expression Profile