RNA id: XM_039800397.1


Basic Information

Item Value
RNA id XM_039800397.1
length 5698
RNA type mRNA
GC content 0.57
exon number 13
gene id nckap5l
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8044961 ~ 8100721 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTGGGGGCTGGTCCACAGCTGTTGTAGTAGGCAGGGTCTATTGGGGTAGGAAGCCTGGCTCACTCGCCCTGGAACAATGGGAGACATGGCAGCCTCTGCAGACagcacagacccacacacaatGCACATGCCCAAGGACGGGCCTTTCTCTAGCTGAAGTGCAGAGGAAACCGGCTTCCTCGCTACGCTCGCAGGGTGACGGCACTTTTACCAGGGAGGAAAATAATCTCCTCCGCAACcgtaaaacagaaatgtaaggTTGTCGCTCTTTTTTTTCCGCTTCTTCTGGTGCCTTACGTTTTTTCGATCTGCTGTGAGGAGAGCTCTGGATGCGCTGACTGGATGACTGAAAAGGCAGCAGGAGGAAGCTCCTTGGTGTTGTTGTTGGGCGATAGAGACAGGAGACGGACTCCTCTTCAAGGATCATAACCAGAGCTGAAACCACAGATGAGAACAATGTCTGATGAGACAGAACAGAGGATGTGTGATGAAGACTTTGGCTCGgacgaggagggagaggagggagacgtGGAGTCGTTCCTGGAGGACAACAGCAGCGAGCTCGTGGACCGGCTGAGGGAGCTGGAGGCAGAAAACTCTGCTCTGATGTTGGCCAATGAGAGTCAGAGAGAGGCTTATGAGAGATGCTTGGATGAGGTGGCCAACCACGTGGTCCAAGCTCTGCTGAATCAAAAGGATCTGAGAGAGGAGTGCATCAAGCTGAAGATGCTGGTGTTTGACCTGGAGAGACAGAACAGAGCGCTTTGTGAGCTCTTTCAGCAGAAACTGCCCAACCACCCCACTGCTCACTACCAGGTCCAGGCGGGACCCCTCCCAGACTACAATGCACAGCTGCACAATGACTCTGCAAAACAGGCGGAGCCTGCACAGACTGAAGCACAAGCCAAGGGAAATGGCTACCGCACACAACATGCCTCCCCGGGCCCTCGTGGCCCCGCCGCCTCCATGGAGGCCCTGTCTCCCTTCTTCAAGAAAAAAGCACACATCCTGGAGGTCCTTCGCAAGATGGAGGAGACGGACCCCCTGAAGTTCCACCCGTCCACCACCAGCTTGTCTTTCTGCGACTACAGCCAGGTGCTCATGTCCACAGAGGCTGTTTTGGCCACGGTGGACCCCCTTCCACTAGCGTGCAAATCCCAGCACACACACTGCCACTGCGCCCGCTCCGACACTGACTCGCACCAGCACGTCAACGGCGACGGGGCGCTGAAGTGCGAGGGAGGGAATACCTGCTGTTTACACTGCAAGAGGAGCCCGGACAGTCCTCCAAAGCCATGCAACCACGTCTGTAGTCCTTTGAAAGGCACCTCGGCCATGCAGAGCCTAGGAGCTCCTGCAGCTGCTAAAAGCGAATGTCACAGTAAGAGCAGGAGAGCCGAGTCGGTCCCCCCACCTAAACAATGCACCAAGAATGAAGCCCACCAGCAACCGGCAGGCGCCGCCGCCGCCCACTCATCCGTCCCAGAAACGGGTGACGGATCAGCCGTGGAGGTGATGGAAGTGGAGCAGGACAGCTCCGAGAGTTGTCCAAACGCTAGTGCCTCTGAAGAGCTCACTGGTTTCTGTCCCACCCCCCACCTGCCCAGTTCTGCACAGATCTCCCACTGTGACAATGAGGCCAGCGACGGCGTTCACAACGGCGTCGACAGCGCCACGTCCAACGACCCGTCAGCCGTCGCCGAGAAGGACGTCACCGATCAGGACGCTTGTTCCGTGAGAGCCGGCGCCTCCGTCAGCCCCAGCGCGTCCTGCCTCAGCGACGTCAAAACCGCCGCCATCAACTCGCCGTCCAAACTGCTCAAGTTCCTGAAGATTCCCTCGATAGGGGAGAAGTCTCAGCCTTCGGCGTCCGCCGTCCGCCTGAGCCCCCAACTCACCCGCAGCTCCAGGATCCCCTGCCGCACCAACAACTACGAGGTGTACCACTCTCCTGTTCCCACGCGCAGAGCCACCACCACGGAACGGTGCAGGCAGCCCCCTCCCCCGCCCGCCAGGTCGGAGTCCTACCCCGCCACGCACTCGGCCCCAACCTCCCCTCCTCAGCCCGAAGACGTCTGCTCCCCGCCCGCCAAGGAAATAAGCTACAGCAGCCTCTCTGCACCTAAAGCCAGCGCCGCTTCAAAGATGGGCGCTCCCTCCTCcacgtcctcctcctcccccaaagTCTCTCGGAAGGTccctcattatgaaaatgtctgTGTTATGACTACCAACTCCAGAGTGGAGGAACCAACCCCGGGCCACGAGAAAAGAACCACGCTTCCATCCCAAGCCAAGGCGAACGGCGGCGAGAGGAAGCTCGTCAAATCGCTACCAGAAAGTGACCTCAACACTCCTCAACGAAAGCAGTCGTCTTCTTCCACGTCGGAGTCCTCGTCGGATGACGAAGaggattctgacagcccggTGTGGGTCAACCATCACAGCCTGCCCAACACGTCCGCCCACGGCAAGGCCTTGCAGGGCAGAGCCAGCTACTCGGTAACCCGAGAGAAGCAGGAGGCGGATGTGCGGGAGATCACCGCGCCGAGCTGCGAGGTTGCCCAGGCGCCGCCTCCGCCGCCGGTCAGGAGGAGCGACTCCTCTTCGATCCCCAAGAGGCCTGTGGCCGTGGCAGCGAGACCCCAGGCGGACTCCAGCCACCACGCTTTCAAAGACAGGCTGGCTGCACTGGGAAAGCTACGGAGCTCCGAGGATTTACAAGTGGGTCTCAGGCCGGTCGACGCGGCGAATGAGGGCACCTACGGGGACGAGAGGAGTAAGACAGCGGAGAGGCCCATGGAGCTCCACAAAGAGGAGCAGAGACATTCAAAATACACGGACTCTTTGGATGGCAAACCCAAAGTGAGCAGTGTCGGCTTGAAGTACACGGGCATGTCTCAGCTTCACGAACAGGCTGTAAAGTCTCCGGGTGCTGCGGTGGTTAAACAGGAGCTGTGTGTTACCAAGACCGAAGTCTCCAAGAGTAAAATCGGTCTGCCGTCCCCCAACGCAGACGCTCCGCAGGTACTACGCAACAACATTAAGTGTCCTGGCTCCCTGAATCTGACCCATAACCTTAAACCAGTTGTTGGTCCTCACAGTAGCAACAGCCCCAACAAAATCCCCCCAAAGTCGCCGTCCAAGCCTTGCCAGGGCCCGTCCGTCCACAGAGGCGGGAAGCCCGCAGAGGCCCCGCGCTACTCGTCCAAATCCGAGGAGCGGACCAAGATCGGcgggaaagggaaaaagaatCCGATGTACGGAGACAGcctgccccctcctcctccgAGACCTCCGGCGTCGGAGGCGGAGAAGCCGCTGCCGCCGGCCCCCAGCCCGCAGTCGGCCATCGAGCAGAAGGTGATGAAGGGCATCGAGGAGAACATGCTGAAGCTCCAGGAGCAGGACAGAGGGGGCCCGGGCGGCGAGGTCAAGCAGAAAGCCTCCAACGGCATCGCCAGCTGGTTCGGCCTGAAGAAGAGCAAACTGCCCGCGCTGAGCCGCAAGATGGACGCCACCAAAgcaaaagaggagaagaaggagtgGAGGATCAACATCCCGTCGGTGGGCCGGGACTCTGGGAAGGTGGCCGGCAGGTGTAAAGAAGGAGTGGAGGGCCTGAACATCTCGACTCTGATGGAGAAGGCGGAGGGGTTGCGGCGGGCACTGGAGGAGGAGCGGGCGTACGTGGAGCGCTCTGGGAGGGGCCACTCCTGCGAGGTGGTGATGGACCCCACCCAGGGACAGCTGGCTGTCATGTACAGGGGGGAGCGCTCGGACAACTTCATGCAACAGCTGCTCAACAGAGTGGATGGGAAGGACGTGATCAGCGTGCCGCAGCGCCGGCTCTCCTTCGACTGTAAGAGCTCCAAGCCGCTGTTCAGTCAGCAGGGCGACGTCATCAGTCACATGGCCAGTCGGGACGATATGGAGAAGGGATCAGACCGAATCGGCAAGATCACATCAGACGAAAACCTCGCCGATTCAGTTCACGCTCAACACTTCGCAGgtTCCGGGGCGTCCACGTACACTCTGGACAGCGGCATCGGGACCTTCCCCCTGCCCGACTGCAGCAGTGGCGCCGCAGGACGCGGCCTGTCCAAGACGAGGGCCGGGGCCGAGCGCCACTCCTCGGGCTCCCCGGGGAGGGCCGGGCGGCGCGCCCGCACCCTGGACCGAGAGCCCACGTCGCAGGACGAGTGCTACGCGCCTCACAAACAGCTGATCCCCACCATTCAGTACGGCTCGGTGCTGGAGGGAAGAAGCTCGGCCGGCGTCATCCGTGAAGACAAAGAGGCCCACGGAGCCAACATGTTCTCCCCCCGCTCCAAGACCTGGACCTTCCCCAACCTGAAGACTCCGGCGGGCCCAGCAGAGGTTTACCTGgcggtggaggaggaagaggaggaggccgTTTCTTTTGGATCTCCATTCCGAGGGAGCGTGAAGGCCAGCGGCCCCTCCTCCAGCCGGGTGGTGGACCCAGGCAGCTTGCCCGTCCCCGTCCAGTCAGGGATGAGCCGCAGGGGGAAGACTCGCACCCCCAGCGTCCCCGAGGTGAGCCGCGAGGCCGGGCTGGAGCTGCTCAGGGAGCGGCCGGAGGAGGCCCTCTCCCCGAGCCGCCCTCAGGTCCTGGAGACCCCCGAGTCCCTCAGCGATTCTCTGTACGACAGTCTGTCGTCCTGCGGCAGCCAAGGATGATCcggccaacaaaaaaaaataaaaaccgggagaggagagagaggagctcatCTAGTCCGCAGACAATAAAGAGCCGGCACCGCTCGGAACTCGACTGGGATGCTTTTGAGGAAAAAGAAACTGAGCCCTGTCCGCAAGAATATGGTGGCGATGGATGCTTTTCTCATCAGGTGTCTCTCTGTTGCAACTGGAAAGCCGCATCGATAAGACTTCTCCTCAGGATCTCAAAAATAAACACGAAGCCAAAAGCCACCCCAAATAAGATAGgttgttcacttttttttttttttctttcccacaatcaatcagactttgacTGTGGACAGTCTTTAATTCATGTATACAGGACTACAAAACGCATGGCTAAGCTAATGATTAGCACAACAGTTGTCACTCCTGGTGGTTGTTCAGCGACGTTGTCTTTTAGTTTGAAGTCATCCATCGAGGAAGAGCAGATCACTGCAACAGCTGATGATCTGGATCAATACATCCATTCTGTTCCCGGATAGCATTTCGCCACAATGTATTTGAGGGGGGGGAACCAAACATGAAgcacccttaaaaaaaaaaacaagttcatGTCTGTGATTCTTTATTGCTAAACTCATGCATCGCAATTTTAAATGTACAAACGATTTTATCGATCATGTTGATATTGTTTTGCGACCGCGGATGGGTCATCAGAATAAGTCTGTTTTTAAAATCCTAATACATTTAAAGGTAATATATACCAGCAATAATAACATAAGAGAAATGGCTACACTATTCAATGAATATGTAtttctattatttatttatttttaaatgtacatcATTTGcagtcatcttttttttttttttatctttctgtGAAAATTGCAGTCTTCCCCTGCTTGGTAGATTATGTTCATATCTTGTGTTCCAACATCTGTTGCTGTCCGTTCCCTAGCCAGTAGAGGTCCTATGTACCTACTGCCGTTTTACAACTTtctaataaaaaatgttttgattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64046 lncRNA downstream 50229 7991869 ~ 7994732 (-) True G47956
TU64039 lncRNA downstream 89705 7932949 ~ 7955256 (-) True G47949
TU63874 lncRNA downstream 421482 7607891 ~ 7623479 (-) True G47837
TU63883 lncRNA downstream 439658 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 536536 7507321 ~ 7508425 (-) False LOC120558662
TU64020 lncRNA upstream 95973 8178655 ~ 8179100 (-) True G47935
XR_005639295.1 lncRNA upstream 199265 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA upstream 199265 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA upstream 199265 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA upstream 199265 8281947 ~ 8296462 (-) False LOC120559498
XM_039800388.1 mRNA downstream 101880 7900773 ~ 7943081 (-) False agap2
XM_039800386.1 mRNA downstream 101880 7900773 ~ 7943081 (-) False agap2
XM_039800385.1 mRNA downstream 107774 7900773 ~ 7937187 (-) False agap2
XM_039800384.1 mRNA downstream 107774 7900773 ~ 7937187 (-) False agap2
XM_039800383.1 mRNA downstream 107774 7900773 ~ 7937187 (-) True agap2
XM_039800401.1 mRNA upstream 18257 8100939 ~ 8112235 (-) False kansl2
XM_039800403.1 mRNA upstream 18257 8100939 ~ 8112235 (-) True kansl2
XM_039800402.1 mRNA upstream 18257 8100939 ~ 8112057 (-) False kansl2
XM_039800404.1 mRNA upstream 21434 8104116 ~ 8112235 (-) False kansl2
XM_039800405.1 mRNA upstream 31443 8114125 ~ 8120699 (-) True ccnt1
TU64023 other downstream 158111 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 546159 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 557901 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 1008586 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 1239255 6804141 ~ 6805706 (-) True G47638
XR_005639386.1 other upstream 23379 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 1607848 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1625649 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1942312 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2560037 10642719 ~ 10654818 (-) True G48697

Expression Profile