RNA id: XM_039800401.1


Basic Information

Item Value
RNA id XM_039800401.1
length 1825
RNA type mRNA
GC content 0.53
exon number 10
gene id kansl2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8100939 ~ 8112235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAACTCTAAGTGGGCGGGCTCAGCTTGTTTCTGCAGTGGTTCATGCAAGAAGAGAAAACCGACGTAGTGTGTTTCGGAAGCTAAACCCAGTCGGATCGCCGTGAGGAAGACTTACGATGAACAGGATACGAATCCACGTTTTGCCTTCAAGTCGGAACCGGGTGACCCAGACACCTCGTCCCCAGGAGCCCCTGGCCTGCTCCTTTACCCAGCGACCATGCTCTCAGCCTCGCCTGGACAGCCTGGATTACTGCATCAAACACATTTTGGAAGATAAGAATGCTCCATACAAACAGTGCAGTTACGTCTCTGCCAAGAATGGGAAGCGCTGCCCCAATGCTGCACCAAAAGTCGAACGAAAAGATGGAGTGACGTTCTGTGCAGAGCACGCTCGCAGGAATGCCATGGCCCTCCGTGCTCAGATGAGAAAGGCATCTTCTGGGCCATCCCCAGAGTCACTGTTGTCTCAGCTAAGTGGATACAACCGCGCAGAGATGCACAGCATTGACGGAGGACGCTCTGAAGCTAGCCGGATTCTAGATGAGGACAGTCTGAGTGAGGAGGAGCAGGGTCCCTTGGTACTAGACCAGACATGGAGAGGAGACCCTGACAGTGAGGCAGACAGCGTTGACAGTGATCACGAGGATCCTCTGAAGCATGCAGGGGTGTACACGGCAGAGGAGGTGGCACTCATCACTCGAGAGAAACTCATCAGGCTCCAATCCCTCTACATTGACCAGTTCAAACGCCTGCAACACCTGCTTAAGGAGAAGAAGCGCCGATACCTGCACAACCGCAAAGTGGAGCACGAAACTCTAGGGAGCAGTCTGCTGACAGGGCCTGAAGGTCTGTCCATGAAGGAGAGGGAGAACCTGAAGAAGCTCAAAGCTCTGCGCCGATACCGTCGTCGGTACGGTGTGGAAGCCCTGCTGCACCGGCAGCTTAGGGAGAGGAGGCAAGCTGTGACAGACGGAGCTCCTCAGacacacacaagaacgGTGCACGAGAAATGCATCTCCTTTGTGGAGGGAACTCGATGTACCAACCCCTGCATGCCTATGACCAGGCACTGTGTCTCACACATCTTCCAGGACGGCAATCAGGTGCTTTTCAAAATGTGTCCAGGCCTGAAAGATGTCCCATGTGAGCGCACCGTGCATATGGGTCAGTCGGAGGATCCTCGCTGCCCGCTGCACCTCACCCTGCCTCCCCCCATGTACCAGCCTGAGCAGGAGCCTCCACCACAGGAGCAGATCACCACTGCAAGCAGGGACATGTATCTGAGTGCGGCAGAGCTTCAGCCCACAGAGAGCCTTCCCCTAGAGTTCAGCGATGACCTGGATGTGGAAGGGGACGGTATGCAGGGTCCTCCGTCCCCCCTACAGTTTGACACGGCCCTGGCCCTGGAGGACCAGACCATCCGAGCCATCGCTGAGGCCCCGATGGACATCCTGACTGGAGAAGACCCAGACCTGGATGCCTCGGAACACGAGCTCTCGGAAAGAGATGTGGATGCCATCATGCATGACCAGATGGTGTCAGAGGTTGCAGGAGGTGAAGGAAAAGAAGCCACTGATCATTCGCTCCAAGACATTGATTGACTCTGCTGCAATTGATGCTCCCAGATGAAGAACCTCTGCAGCATCATTATAAAGAACATTCACTTCCACAAAGACTGATGTTGAGGCAATAACCTTTACAGCCCGGGGGGTATTTCTttaggttttttatttttatttttttctgggtTAAATTGCCCTAAAATTGTACCTTATTAGTTTGTCTGTTGAATAAAAGGACACTCATCTTTCATCCACAAATAAA

Function

GO:

id name namespace
GO:0000123 histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64064 lncRNA downstream 26704 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA downstream 50518 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA downstream 50518 8047822 ~ 8050421 (-) False G47972
TU64046 lncRNA downstream 106207 7991869 ~ 7994732 (-) True G47956
TU64039 lncRNA downstream 145683 7932949 ~ 7955256 (-) True G47949
TU64020 lncRNA upstream 66420 8178655 ~ 8179100 (-) True G47935
XR_005639295.1 lncRNA upstream 169712 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA upstream 169712 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA upstream 169712 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA upstream 169712 8281947 ~ 8296462 (-) False LOC120559498
XM_039800398.1 mRNA downstream 218 8044961 ~ 8100721 (-) False nckap5l
XM_039800397.1 mRNA downstream 18257 8044961 ~ 8082682 (-) True nckap5l
XM_039800396.1 mRNA downstream 30963 8044961 ~ 8069976 (-) False nckap5l
XM_039800388.1 mRNA downstream 157858 7900773 ~ 7943081 (-) False agap2
XM_039800386.1 mRNA downstream 157858 7900773 ~ 7943081 (-) False agap2
XM_039800405.1 mRNA upstream 1890 8114125 ~ 8120699 (-) True ccnt1
XM_039800406.1 mRNA upstream 11312 8123547 ~ 8130737 (-) True LOC120558984
XM_039800410.1 mRNA upstream 52234 8164469 ~ 8169726 (-) False LOC120558989
XM_039800411.1 mRNA upstream 52234 8164469 ~ 8169708 (-) True LOC120558989
XM_039800413.1 mRNA upstream 59955 8172190 ~ 8174992 (-) True LOC120558991
TU64023 other downstream 214089 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 602137 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 613879 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 1064564 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 1295233 6804141 ~ 6805706 (-) True G47638
TU64676 other upstream 1578295 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1596096 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1912759 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2530484 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3776706 11888941 ~ 11891046 (-) False srxn1

Expression Profile