RNA id: XM_039800406.1


Basic Information

Item Value
RNA id XM_039800406.1
length 876
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120558984
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8123547 ~ 8130737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGGCGCTGTGAAATAAAGGGAGTGGGAGCGGAGGGGTTCAGAAGTAGAGCCGCTCCACTTTGATTGGAGGAAGTACTACATCAACAAAGAAAGATGGCCGAAGTGATTGAGCTGCAAAAACTCAAGcTTGCTGAACTGAGGCAGGAGTGCGAGGCCCGAGGTCTGGACACCAAGGGAAACAAAGGAGAGCTCATTGCCCGACTGCAAGCCTATCTGGAGGAGCACGAGGAAGATGTGGATGTAGATGAGGTGCTGGCAGAGGATACAGAGGACTTTCCTAAAGTTGAGAGTGCCAACGATGTAAAAGACGAGAAGGATTCCGAGTCTACTGAGTGCGAGCCacCTGCTGATAAGAAGGTGGTGAAAATAGCTCCTCCGTCATCTTCTGGTGAAAGACTACAAAAAAGAGCTGAACGTTTCAACCTGCctgcaacagcagagagcaaaaAGGCCATACGTGCAGCAAGGTTTGGTGAATCCACAGAGAATACCAGTCCCGCTCCAGGCGCCGTTGCCAACAGCAAAGCTCCTGTGAACGTCGATCAGCTGAAGAAGAGAGCAGAACGATTTGGCATGAATGTTTCGTCCGTTTCACAAAAGATTGAGGAGGATGAAAAGCTgaaaaagaggaaggagaggttTGGGgtcacagcagctgcaggcGTAGCTGTTTCAGCCGATGTCGagGCAAAGAAAATGAAGCGGGCTGAAAGATTTGGAAAGAGTGAATAATGTTTTTAGagcctgtatttttttttttttttgtaaagcattTTCATTACTGCACAACACAGAGATCCCTGAATATGACACATGTCACTAATGGGATTCCTGTAAATCAAAAGTATAATTAAATGCAAAGATAAATGGGTCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18732 SARNP, CIP29, THO1; SAP domain-containing ribonucleoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64064 lncRNA downstream 49312 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA downstream 73126 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA downstream 73126 8047822 ~ 8050421 (-) False G47972
TU64046 lncRNA downstream 128815 7991869 ~ 7994732 (-) True G47956
TU64039 lncRNA downstream 168291 7932949 ~ 7955256 (-) True G47949
TU64020 lncRNA upstream 47918 8178655 ~ 8179100 (-) True G47935
XR_005639295.1 lncRNA upstream 151210 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA upstream 151210 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA upstream 151210 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA upstream 151210 8281947 ~ 8296462 (-) False LOC120559498
XM_039800405.1 mRNA downstream 2848 8114125 ~ 8120699 (-) True ccnt1
XM_039800401.1 mRNA downstream 11312 8100939 ~ 8112235 (-) False kansl2
XM_039800403.1 mRNA downstream 11312 8100939 ~ 8112235 (-) True kansl2
XM_039800404.1 mRNA downstream 11312 8104116 ~ 8112235 (-) False kansl2
XM_039800402.1 mRNA downstream 11490 8100939 ~ 8112057 (-) False kansl2
XM_039800410.1 mRNA upstream 33732 8164469 ~ 8169726 (-) False LOC120558989
XM_039800411.1 mRNA upstream 33732 8164469 ~ 8169708 (-) True LOC120558989
XM_039800413.1 mRNA upstream 41453 8172190 ~ 8174992 (-) True LOC120558991
XM_039800409.1 mRNA upstream 57331 8188068 ~ 8217881 (-) True jph2
XM_039800967.1 mRNA upstream 121441 8252178 ~ 8255966 (-) True fitm2
XR_005639386.1 other downstream 17352 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 236697 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 624745 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 636487 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 1087172 6955204 ~ 7036375 (-) True LOC120558602
TU64676 other upstream 1559793 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1577594 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1894257 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2511982 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3758204 11888941 ~ 11891046 (-) False srxn1

Expression Profile