RNA id: XM_039800557.1


Basic Information

Item Value
RNA id XM_039800557.1
length 1027
RNA type mRNA
GC content 0.42
exon number 4
gene id mrps25
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16626127 ~ 16628418 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTATGAAAGGAAGGTTTCCGATCAGGAGGACTCTGGAATATCTCCAGAAAGGCGACATCATCTTCAAAAACAGAGTGAAGATCATGACGGTCAATTACAACACACATGGAGAACTCAGCGACGGAGCAAGAAAGTTTGTGTTCTTCAATATTCCTCAGATTCAGTACAAAAACCAGTGGCTTCAAATAATGATGTTCAAAAATATGACACCATCACCATTCTTGAAGTTCTACCTGGACGATGGAGAGCAAGTTCTAGTAGATGTGGAAGGGAAGGACCACAAACAAATTTCACAACATGTCAAGAAGATTTTGGGCAAATCAGAAGAAGTGTTACAAGCTGAGGCTCGAGCCAAGATGCAGGCGTCCAACCCCGCCAACTTTGGGCCCAAAAAGTACTGTCTGAGGGAGTGTATCTGTGAGGTGGAGGGCCAGGTGCCGTGTCCTGGCAGCACGCCGCTGCCCAAGGAGATGACGGGCAAATATCGTGCCCAGATGGCAGCATCACATGAGTGAGAAGCTGAGAACTGGACAATATGGCACTGTTGATTTTGTACGATTACATATAAGGACTACCGAATTGCATATTTTGTTGTAAATTCATGTAACTAAATGGGTCCCACTATGCTGTGCATTGTGAGAACGCCACTGGCTGGACTGAGACCCTCCAGTCCACATGAGTAGCAGAAACTTACCCAAACATGACTAACTTGTTGTCAAACCTGGTGTTTTTAGGTGATGGGGTTGAAAAATCCACATATCAGGATGCAATTTACATCAAGCAGTGTCAACACTGCAatctaaacaaataaaaacgatTTGCCTGTGTGGCGGTAGTTGTCGCTCTGTGTAAACATTAGGAAAATCTAAATCCTAAGTATTTTCATGCAAGAGGCAGTATCGAGTTGAGATTGAACATGTTAACAGATTTATGGCAAGAATGACAAACATTTTACAGAGATGACAATTTTATTGGTGCTGAGATGGGAGTTTTCTAAAGTTAATAAATTTATGTGTGTCTAAA

Function

GO: NA

KEGG:

id description
K17404 MRPS25; small subunit ribosomal protein S25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67316 lncRNA downstream 45145 16580076 ~ 16580982 (-) True G50371
TU67178 lncRNA downstream 207514 16416921 ~ 16418613 (-) True G50278
TU67119 lncRNA downstream 246504 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA downstream 246504 16373144 ~ 16379623 (-) True G50230
TU66980 lncRNA downstream 669455 15952530 ~ 15956672 (-) True G50143
TU67324 lncRNA upstream 32580 16660998 ~ 16663045 (-) True G50378
TU67328 lncRNA upstream 37632 16666050 ~ 16679676 (-) True G50382
TU67335 lncRNA upstream 85643 16714061 ~ 16714748 (-) True G50389
TU67417 lncRNA upstream 316353 16944771 ~ 16944972 (-) True G50443
TU67455 lncRNA upstream 435400 17063818 ~ 17064746 (-) True G50476
XM_039799897.1 mRNA downstream 49041 16528518 ~ 16577086 (-) False tmcc1a
XM_039799895.1 mRNA downstream 49208 16528518 ~ 16576919 (-) False tmcc1a
XM_039799894.1 mRNA downstream 49208 16528518 ~ 16576919 (-) False tmcc1a
XM_039799893.1 mRNA downstream 49208 16528518 ~ 16576919 (-) False tmcc1a
XM_039799889.1 mRNA downstream 49208 16528518 ~ 16576919 (-) False tmcc1a
XM_039801804.1 mRNA upstream 2154 16630572 ~ 16643870 (-) False nr2c2
XM_039801803.1 mRNA upstream 2154 16630572 ~ 16643870 (-) True nr2c2
XM_039801805.1 mRNA upstream 5558 16633976 ~ 16643870 (-) False nr2c2
XM_039801227.1 mRNA upstream 21479 16649897 ~ 16658802 (-) True wdr46
XM_039800424.1 mRNA upstream 56889 16685307 ~ 16706539 (-) True LOC120559001
TU67071 other downstream 342271 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1772310 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1772310 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2091522 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2480905 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 1059697 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1211126 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2251947 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3071355 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 3072912 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile