RNA id: XM_039800560.1


Basic Information

Item Value
RNA id XM_039800560.1
length 3035
RNA type mRNA
GC content 0.52
exon number 14
gene id si:ch211-117c9.5
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18855940 ~ 18873169 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGTCACACTTAACTGACCGTGGAGCAGATCACATTCTTCGTCCGTCAAACCACTGCATCGCGTAAAGGTTCATGGACTTCTAACTGGACTGTTtaaaccacacacaaaaaaagcttCACCCTAAGGCGCAGTATCATTTTCTTTTAACTGTTATCCATGAGATTCTTCAGGCTTACCTTCAAGTGCTTCGTCGACTGCTTTTGAATCTCCTTTGTCAACGGCTGAACTGACCGCGGCGCTTTGTGAAATTGTCCATCTCTTGGCTGAGCTGAGGGGTTCCAACGTGTGATCATCACAAAAACtgcgatttctttttttatttcgaTAAGGCGAAATTACAATCTCAGCGAATCAAAAAGACAACTGGAGCCCTGCATACCAGGCGGCTACATCTCTCTGTCTGCCCCTCTGAGCCCACCGGGGTGCCTTGCTAGCCAGGCACATTCATCAAACTTCAGCAGCCCCTGGCTCAAACCATCAGCCAGCttgctttacaaaaaaaaacaagatttgttTTTGTGCAGGTACCCTACAACATGTCACCAGAGTTGAAAGAGAATAGCCAAGGTGAAATCAGCCTCCCCCAGTTGGAGGTAGGGAGCCTGTCTGAGGAGGAGGGCGGGGGATCAGCTCGCCCCCTGGTGCCTGTGCCTGGAGCGGGCCCAGGGTGTGGTGAAGGCGGAGGGGCTGGCCCACTGCAGACCCAGGACGGGGCTGCAGCTGGGAGTGGAAATGGGGCTGTAGCAGTACCAGTGGTGGAGAGAGAAACTTGGACCAGGCAGATGGACTTCATCATGTCCTGCGTGGGTTTTGCTGTCGGCTTGGGCAACGTGTGGCGGTTCCCTTACCTTTGCTACAAGAACGGAGGAGGAGTTTTCCTGATCCCCTACTTGCTCATTGTGTTCATCGGAGGCATCCCAGTCTTCTTCCTGGAGATTGCACTGGGGCAATTCATGAAGCAGGGAGGGGTCTCTGCTTGGAACATCGCACCCCTCTTCAAAGGTTTGGGCTTGGCCTCAATGGTGATAGTGTTCTTCTGTAACACCTATTACATCATGATTCTTGTGTGGGCCCTTTACTTTCTCTTTCACTCCTTCACCAACGAGCTGCCATGGGCCACCTGTGGACACCCCTGGAACACCCCCAACTGTACACAGGACTTCCGTCGAGCCTGCCACAACCGCAGTGCTGCCCAGGCGGCTCTGCCATCGTCTTCTGCCAACCTCCTCTCCTCCACGTCCCCACTGAACCTGTCTTCAGCCCAGCTCCTTCTCAACGGAAGCTGCCCAGAGGCTGAGGGCATGCGCTCCCCAGTCATCGAGTTCTGGGAACGGAAAGTGCTCCGTCTGTCTGGTGGGCTGCACGAGCCTGGTGACATCAGCTATGAGATGGTGCTGTGTCTCATAGTCACCTGGATCATTGTTTACTTCTGCATGTGGAAAGGAGTTAAATCTACTGGCAAGGTTGTTTACTTCACAGCTCTGTTCCCCTACCTGGTTCTGGTCGTTCTTTTGGCCCATGGAGTCACTCTTCCCGGAGCTTTAGATGGGATTGTTTACTACTTGAAACCAGACTGGTCCAAACTTGGAGAAGCACAGGTGTGGATTGATGCAGGCACTCAGATTTTCTTCTCCTATGCCATCGGACTGGGCGCTTTGACTGCGCTGGGCAGCTACAATCGCTTCCATAACAACTGTTACCAGGATGCATTCTTGCTGGCCTTCATTAACAGTGGAACGAGTTTCTTTGCAGGCTTTGTGGTGTTTTCCGTGCTGGGCTTCATGGCTGCAGAGCAAGGCGTGGACATCAGTAAGGTAGCTGAGAGTGGTCCAGGCCTGGCCTTTATAGCCTATCCCAAGGCTGTGACTCTGATGCCTATGGCGCCGCTCTGGGCAGCACTTTTCTTCTTTATGTTGCTCATACTAGGCCTGGATAGCCAGTTTGTTGGGGTAGAGGGTTTGATAACGGGAATCATGGACATGCTACCACCTAAATCTGCCCTGCGGCGAGAGGTGGTAGCAGCCATCTGCTGCGTCATCTGCTTCCTGATCGACATGTCCATGGTCACTGAGGGAGGAATGTATGTCTTCCAGCTGTTTGACTACTACTCTGCCAGTGGCATCACTCTGCTGTGGCAGGCCTTCTGGGAGTGTGTGGTGATTGCATGGGTCTATGGCGCAGACCGTTTCATGGATGACGTGGCTCGTATGATCGGCTATCAGCCCCTACCCTACATGAAGTGGTGCTGGTCCTACATCACGCCTTTTGTCTGTGTGGCAGTGTTCCTGTTCCACGTGGTGAACTACAAGCCTCTGACCTACAACACAGTGTACACTTACCCCTTGTGGGGTGAATTGCTTGGCTGGGCATTGGCCCTGTCCTCCATGCTCTGTATCCCTGTCACCGTTATCTACAAACTACTGCGCTGCAAAGGATCGTTGCGGGAGCGGTGGCAGCACCTAACCACCCCGGTTTGGGGCCGACATCACCTGGAGTACCTGGCCCCGGAGAGCGAGGCCAAACTGTTGCCCCCTGCCGAAACCAAGAGCACGCTTCTCTTTGAAAGTGTCATCTGATGAGCTAAGCCCCACAGAACACAGAGCCAAGGTCGCCCATGACAtcaacacacaaactacacaaaacacatgcacaccacACAGGCCTGGTTAAAGCAAAGTGCAGATTGGAAAATCCCTGGACAAATGGACCAAAGAAAAAGATGGGAGAAGAACTGAAACACACCCGCACCCATACAGTCATCACATGCTGTTACACgctctgctctgctttctgaCTCTACCTCGctgtctctcccctctttctgcTCCCTGCCTTTGTGCTGTCCCGTCCCGTCTCGTTCTGTGAATGTGATGTGTCCAGTGTAGTTGCAGTATCTTCCCTTTCTGTGCCTGTCTGTCAGGCTTTCAACAACATCATCCTTCCCAACATGTCATGCCATTTTGTGATGAATGAGCAGAAacttaaaagattaaaaatgaaAGACCTCATATCTGCTGCTGATATGCTATGGTC

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05041 SLC6A8, CT1; solute carrier family 6 (neurotransmitter transporter, creatine) member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68243 lncRNA downstream 97439 18758042 ~ 18758501 (-) True G51069
TU68241 lncRNA downstream 115597 18738483 ~ 18740343 (-) True G51068
TU68237 lncRNA downstream 142727 18712675 ~ 18713213 (-) True G51064
TU68142 lncRNA downstream 220705 18634465 ~ 18635235 (-) True G50991
TU68086 lncRNA downstream 350924 18504469 ~ 18505016 (-) True G50945
TU68268 lncRNA upstream 49694 18922863 ~ 18928835 (-) True G51088
TU68282 lncRNA upstream 75664 18948833 ~ 18950436 (-) False kcnd3
TU68313 lncRNA upstream 354152 19227321 ~ 19227905 (-) True G51122
TU68349 lncRNA upstream 454483 19327652 ~ 19415195 (-) True G51147
TU68459 lncRNA upstream 583483 19456652 ~ 19459405 (-) True G51228
XM_039801585.1 mRNA downstream 29168 18818842 ~ 18826772 (-) True LOC120559674
XM_039801584.1 mRNA downstream 38110 18801947 ~ 18817830 (-) True LOC120559673
XM_039800724.1 mRNA downstream 68657 18775750 ~ 18787283 (-) True samhd1
XM_039799506.1 mRNA downstream 132731 18713626 ~ 18723209 (-) False LOC120558486
XM_039799702.1 mRNA upstream 1586 18874755 ~ 18886895 (-) True LOC120558627
XM_039800430.1 mRNA upstream 57806 18930975 ~ 18933494 (-) True parapinopsina
XM_039800735.1 mRNA upstream 72799 18945968 ~ 19077781 (-) False kcnd3
XM_039800736.1 mRNA upstream 72799 18945968 ~ 19077781 (-) False kcnd3
XM_039800733.1 mRNA upstream 72799 18945968 ~ 19077781 (-) True kcnd3
XR_005639183.1 other downstream 969607 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1166180 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2572084 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 4002123 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 7196 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 826604 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 828161 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 833510 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1447598 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile