RNA id: XM_039800742.1


Basic Information

Item Value
RNA id XM_039800742.1
length 4362
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120559199
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17405102 ~ 17520570 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGACACTCAAAGGAACAATTGTCTTACGATTCAAGTCTATAAGTGCATTTGTTCGCCTTGTTTACCTTCTCGTTGAACTGTCTGAAGACAACTTCCTGAAAACCTTGCCATGAAGTGATgctactcttttttttctttctttttttctagcCAGCTGAATGACGTCTCGCAGGGAAAGGGGGCTGAAAACTCAGCGCACACAGTGAATCCCTCGCTGTGACTCATTCATTTTGTATAAATGCGAGCGGTTGCGGAGACCGAAAAAGAGCCGGGGCGTTAATTAGCTGGGTTTTTCTTAGTCCTCTGCTCAGTGAACGCACATTTGAGCGCATAGCCTACTACTcgttttctttccttctttttttgagACTGTGGAGATGATATGCACCCCTGGGAGACAGACACCACACCGACCGAGCCATTCCTGCGCTCCCGTGGAGTTGGTCAGAGCAAGAAGAATGTCACCCACTTCTGCCGGTCCTAACATCTAAGTATTGATTTTGAGAGCTAATTCTTTAAAATTCACCAAATGTTATTTGGCAGAATTGGCGCTTTAGATTGTGAACATTCTCAGCAGCGGCTTCATTGCGTTTCGCTCTTTGGATTCAGCATACATGGACAAAATTAGGCCAATTCATCAGCGGCGGGTGATCATCTTTTTTTGCTGATATTTTCTGTCGAATGGATgtagcctctctctctccgagGGAACTAAATTACCGTCAGGAGCTTCACGATTCAACAAGCTGCACCGCTCACTCCTGGCAGCAAAGCGATGGGCGCAGTTTGTCTGAGCCATTTACTGCGTCTTGGTTCCTCAGCCCAGCTTGTTGAATCTCCTTGCTGACAAGAATGGGTTCGTTTTAACAAACTTCTTCGCCTCTCTGGTTCTATCTTCGGCGGATTGCAGACTCCATCTTTCCTAAAAGTTGACCATGGCTAGTGCTGGTTTGTGTGTGAAGCTGAACACTATATGGAGAGTGTTTTGGCTCATGGGGACTGTGGTAGATTTTGCGCTCCCTCAGGAGACTTATGCGCCCCATTCAATACGGACAGAGGGGCACCTGACCCTCGGTGGACTCTTCCCGGTGCACGCTAGAGGGGCCGACGGCACGCCGTGCGGGGACCTCAAGAAGGAGAACGGCATCCAGCGGCTTGAGGCCATGATGTACGCTTTGGACCAAATTAACCAGGACGAGACTCTCTTACCCAACATCACCTTAGGCGCCCGGGTGCTGGACACTTGTTCGAGGGATACCTACGCGCTGGAGCAATCTTTAACTTTCGTCCAAGCCCTGATCACGAAGGACACCTCCGACGTGAGATGCACTAATGGGGAGCCACCGGTGTTTGTCAAGCCTGAAAAAGTGGTGGGAGTCATCGGAGCCTCCGCGAGCTCGGTATCGATTATGGTTGCCAACATCCTACGCCTCTTTCAGATCCCGCAGATCAGCTATGCGTCAACAGCCCCGGAGTTGAGCGATGACAGGCGCTATGATTTCTTCTCACGGGTGGTTCCTCCAGACTCATTCCAGGCCCAGGCCATGGTGGACATTATCCGAGCCCTGGGCTGGACTTACGTCTCCACCATCGCCTCAGAGGGCAGCTATGGAGAGAAGGGAGTGGAGGCCTTCACACAACTCTCTAAAGAAGCAGGTGGAATCTGTATCGCCCAGTCTTTGAAAATTCCCCACAACCCCAAGCTGGAGGATTATGACAAAGCCATCCAACAACTGCTGGAAACGCAGCACTCACGGGCAGTCATCATCTTTGCCAGTGAAGAAGACATACGGGGAGTTCTCAATGCCACCAAAAGGGCGAATCAGGTGGGCCATTTCCTGTGGATTGGATCTGACAGCTGGGGGGCTAAGAGCAGCCCGATCCACCAGCTCGAGGATGTAGCCGTGGGAGCAGTCACTATACTGCCCAAACGCTCCTCAGTTGAAGGGTTTGATGAATACTTTACTGCGCTCACCCTCGAGAACAACCGCAGGAACGTGTGGTTTGCTGAGTTCTGGGAGGAAAACTTTGACTGCAGGCTCCTCAGTGCCTCGAAGAGAGAGGATACCAGCCGTAAATGCACAGGCAAGGAGCGCATCAGGAACGACTCCAAGTATGAACAGGAAGGGAAGGTGCAGTTTGTGATTGACGCGGTTTACGCCATGGCCCACGCTCTCCACAGCATGCACAAGGACTTATGTCCTGATCATCCTGGTGTTTGTCCACAAATGGAGTCTGCTGAGGGAAAGACTCTGCTGAAGTACATACGAAACACCAGCTTCAACGGCAGTGCTGGCACCTCTGTTGTGTTCAACAAGAACGGCGATGCTCCAGGACGCTATGACCTGTTCCAGTTCCAGATGACCAACTCCTCCACCCCAGAATATAAGGTGGTAGGACAGTGGGTGGAGAACCTCCAGCTCATGCTGGAGGAGCTTCAATGGCCAGATGGGGAGCAGGAGGTGCCTATCTCTGTGTGCAGTCTGCCCTGCAAAActggagagaggaagaagagagtaAAGGGCATGCCGTGCTGCTGGCACTGTGAGCTTTGTGATGGCTACCAGTACCAGTACGACGAGACCTCCTGCAGACTGTGTGCCTACAACATGAGGCCCAACCCTAACAGGACCGCCTGTCAGCCCATCCCCATTGTCAAGCTGGAGTGGCACTCCCCTTGGGCAATTATCCCCGTCTTCCTGGCCATGCTCGGTATCATTGCCACCATCTTTGTCATGGCGACCTTCGTACGCTACAATGACACACCCATTGTGCGGGCGTCGGGCCGAGAGCTGAGCTACGTGCTGCTAACTGGCATCTTTCTGTGTTACATCATAACCTTCCTCATGATTGCCAAACCTGACGTAGCCGTGTGCGCTTTCAGGCGGATCTTCCTGGGCCTGGGCATGTGCATCAGCTACGCCGCGCTGCTCACCAAGACCAACCGTATCTATCGGATCTTCGAGCAGGGCAAGCAGACGGTCACGGCCCCGCGCTTCATCAGTCCCACCTCCCAGATTGCCATCACTTCCAGTCTGATCTGTGTGCAGCTGCTGGGCGTGCTGGTGTGGTTCGCCGTGGACCCTCCGAACACCATCGTCGACTACGATGAGCAGAAAACCATTAACCCCATGCTGGCCCGTGGCGTGCTGAAGTGTGACATCACAGACCTACAGATAATCTGCTCGTTGGGCTACAGCATCCTGTTGATGGTGACCTGCACCATCTACGCCATCAAGACAAGGGATGTACCAGAAGACTTCAATGAAGCCAAGCCCATTGGCTTCACTATGTACACCACTTGCATAGTCTGGCTGGCCTTCATCCCGATTTTCTTTGGCACAGCCCAGTCAGCAGAGAAGCTATACATTCAGACAACCACCCTGACCATCTCCATGAACCTCAGTGCCTCCGTAGCACTGGGCATGCTCTACATGCCCAAGGTGTACATCATTATCTTCCACCCTGAGATGAACGTACAGAAGAGGAAGCGTAGCTTCAAGGCTGTGGTCACAGCTGCCACAATGTCATCGCGTCTGTCCCAGAAGCCAAACGAGAGGCCCAACGGAGAGGCTAAGACTGAGCTGTGTGAGAACCCTGCTGCTGACCCCATGAGGAGAGCAGCTctagaggaacagagaaagagagacaggagggCGAGCGCAGGCATCACAGCACCACCTGCAGTACCTATGCACTCCAGGACTGTGGATAGCATCCAACCTTCATCCAGACATGATACATGAGTACTGACAGAGACTAGCACAGGTGTAGGCCAGTGTGGCTGGGTCGGCATAACCAACCAAACTGTAGGTTTTAAACTTGTGTTGTGGCCCCTTTTCTCTCTGACAGAGAACAACTTGCCTGCTAAATGGGGTCACTGTGAACGAGGACACACCGCAAAATAAAAAGGACAGTGGATCTGCTTTCAagatattttcttttgaaatgtCATAAAGCCATATTCTCTTGGGGTTCCCATtatcagattttttgttttgtattgtttcaGTGATTTTCTTCTGTGCCTCTTTTTCTTGCAGTTGATTTGATTACCTTGAACAGCAAGCTCTGCCACATAGAGTATACTTTGTTTTACTgaaaccaactcaaatcagtcccagatgattattattattattatgtcagAGTGATGGGCATTGTAAGTatggttttttttgtaaatatttgagAGTATTTTCATGTTTGGAGTACAAAAATAGATATCCAGTCTTTGTTCAATTGGATTTGGATGGTAATGAAAAGCACCACAAAGTGTTCACTTTGCATGTGCCAATGTATGTTTGTTCTATTTGatgtaaacaacaaaaaaagagaaataaattcTGAAAATGATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04609 GRM7; metabotropic glutamate receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67638 lncRNA downstream 153828 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 199473 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 211467 17190077 ~ 17193635 (-) True G50567
TU67605 lncRNA downstream 251675 17152449 ~ 17153427 (-) False G50553
TU67604 lncRNA downstream 251708 17152449 ~ 17153394 (-) False G50553
TU67797 lncRNA upstream 200990 17683048 ~ 17683519 (-) True G50709
TU67884 lncRNA upstream 300630 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 492697 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 492697 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 521616 18003674 ~ 18024302 (-) False samd10b
XM_039801397.1 mRNA downstream 46404 17325207 ~ 17358698 (-) True LOC120559574
XM_039799285.1 mRNA downstream 158899 17242880 ~ 17246203 (-) True rpl32
XM_039799280.1 mRNA downstream 164359 17216184 ~ 17240743 (-) False LOC120558336
XM_039799278.1 mRNA downstream 166989 17209216 ~ 17238113 (-) False LOC120558336
XM_039799559.1 mRNA upstream 39870 17521928 ~ 17542122 (-) False tasorb
XM_039799558.1 mRNA upstream 39870 17521928 ~ 17542122 (-) True tasorb
XM_039799562.1 mRNA upstream 60541 17542599 ~ 17546303 (-) False asb14b
XM_039799560.1 mRNA upstream 60541 17542599 ~ 17546303 (-) True asb14b
XM_039799561.1 mRNA upstream 60541 17542599 ~ 17546093 (-) False asb14b
TU67071 other downstream 1121246 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2551285 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2551285 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2870497 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3259880 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 206057 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 357486 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1398307 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2217715 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2219272 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile