RNA id: XM_039800751.1



Basic Information


Item Value
RNA id XM_039800751.1
length 1260
RNA type mRNA
GC content 0.46
exon number 2
gene id spryd4
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14616611 ~ 14620139 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AACATGTGAGCAACAACcgtagacagtatataagaagcaGCAGTGAAAAACATGGCGATGGTCGCTAAAGTAGTCCGTCTATGTCGCCTGGCAGGACGGACTGTCACCTCACTGTCAGTCACACACAGGCAGCCTATCAGTCTGCCAGCGAGGATATGCTACATATCAACCTCGACAGGGAACAAGCTTCAGTTCAGGCTCGATGAGCAGACAGCTCACAGCAGTCTGGACCTCTTCAAGAAAGACACTGCCGTCATCTACCGCATGCTGGGTCTGGACCCCAGCTACGTGCCagacaacccagagcgtttccGAGACTGGGCCGTTGTGTTTGGCAATGAGAAGATCAGCAGCGGACGACACTACTGGGAGGTGACGGTCAAAAAGTCTCAAGAGTTTCGTTTGGGTGTGGCCGAGGCCCTGATGTCCAGAGAGGACTGTGTGGGAACCAATAGCTCCTCCTGGGTGTTTGGCTATGCTCAGCGCAAGTGGTTTGCTATGACCAGCAACAAGATGGTTCCTGTGACGCTGGTGGGCAAGCCAGACCGCATAGGCATCCTGCTTGACTACCAAGCGGGCCTTCTGGGGCTGGTGGACATAAAAAAACCCACAATCATTCACACCATCAAGGTCCAGTTCAAGACTCCCCTCTGCCCCGCGTTTGGACTTTGGGACGGGGAGCTGCTTACACACTCTGGTCTGGAGGAGCCTGAAGGCCTGAAGTGAAGCAGGATGAGCTGTGATGATTGTGATGGCCGTGGGCTTGTGTTTGGTACCGTGGCAGCATTTATCCAAACAGGAAAGAAAGCAATATCTATGTAATCATTTACAGCTTAATTACAGATGATGGTTCATTTTCTGTGGTCCAGATGGTTCATTGTAATGAATATCTTATCAATGCAAGTTTATACTTTGTGTGTTATCTCAGGCAATCATAGCACATGCATAAGCATGTTATTGTGTGTACCTCATGTATTACCTCTCAGACTAACTAATGTGAAAAGGATGTATGGTTGTTTTTGAGAGGAACTTACATTACCCACACAGTTACAAAGCTGAAATCAACAACAATACCTTTTTTGGTATCAtgttcatactgtatattgtttaataaaaataacttcACTGAAACAGCTTTTACATTACATATAGCAAGATTATACACATTTACAGTGACAGACTAAAGCTTAAGTCATGTGGAGGAATACTTTTCACTGCCTTTTACTGagttaaatgaaataaaacaatgtgaATATAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66514 lncRNA downstream 71979 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 190996 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 212824 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 213981 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 395993 14220217 ~ 14220618 (-) True G49682
TU66554 lncRNA upstream 49314 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 53489 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 62571 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 225199 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 242656 14862795 ~ 14865747 (-) True G49862
XM_039801487.1 mRNA downstream 25773 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA downstream 25774 14565817 ~ 14590837 (-) False col2a1a
XM_039800136.1 mRNA downstream 65053 14539788 ~ 14551558 (-) False map3k12
XM_039800135.1 mRNA downstream 65053 14539788 ~ 14551558 (-) True map3k12
XM_039799582.1 mRNA downstream 99498 14435245 ~ 14517113 (-) False dlgap4a
XM_039800783.1 mRNA upstream 64906 14685045 ~ 14698017 (-) False LOC120559225
XM_039800785.1 mRNA upstream 64906 14685045 ~ 14697898 (-) False LOC120559225
XM_039800786.1 mRNA upstream 64906 14685045 ~ 14697876 (-) False LOC120559225
XM_039800784.1 mRNA upstream 64906 14685045 ~ 14697875 (-) True LOC120559225
XM_039800087.1 mRNA upstream 87279 14707418 ~ 14750021 (-) False LOC120558823
TU66513 other downstream 82006 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 471389 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1363139 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2177886 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2224940 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 225199 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 225199 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1660905 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3067976 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3219405 17839544 ~ 17886333 (-) False zbtb46

Expression Profile