RNA id: XM_039800756.1


Basic Information

Item Value
RNA id XM_039800756.1
length 1928
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC120559206
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13520484 ~ 13527197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAAACAACATCTAAAAGAAACGAATTTCTCATGGCAGTTGTTTAAacaatgtaggcaataaaagAAACCACcaccttgtttttttattcagaccCACGTTAAGGCAAGcaggaggataaaaaaaaaatacgttgTCCCTGTATGGGCAGTTTCTGCTGCTGTGTGCAGCTTTGACACTCGGGAACACAGCAGACACAATCGGGGACATGGGACCGTGAAAGTATGGCGGATGCCGAGGAGCCGGAGAAGAAAAGAAGGCGAATAGAGGACCTGACTGAGAAGTTAGTGACGAATGCAAAATAAAGAATGGCTGTAGATGGTGGACACAGGGACGGTGGTTGCGACTGGGATGGCCGGTGGAATCATGTGAGGAAGTTTTTGGAGAGACCTGGCCCGTTCACCCATCCTGACTTTGAGCCAAGCACTGAGTCTCTACAGTTCTTGTTGGAGACATGCAAGATTCTGGTCATTGGTGCTGGAGGACTTGGATGTGAGCTCCTCAAAAACCTGgcCCTGTCTGGATTTCGCCTTATTCATGTGGTTGACATGGACACGATTGATGTGTCCAACCTCAACAGGCAGTTTCTTTTCCGATCCAAAGATGTTGGACGACCAAAGGCAGAAGTTGCTGCCGACTTCATCAACAGTCGTATCCCTGGATGTAAAGTGGTCCCTCACTTTAAGAAGATCCAAGACTTTGATGACTCTTTCTACAGGCAGTTCCACATCATCGTCTGTGGACTGGACTCCATCATTGCCAGACGCTGGATGAACGGGATGCTGATATCCCTCCTGAGCTATGAAGACGGCGTCCTGGACCCCAGCTCCATCATTCCTCTCATTGATGGAGGAACGGAGGGCTTAAAAGGAAACGCTCGTGTCATTCTGCCAGGCATGACTGCATGCATCGACTGCACATTGGAGCTGTACCCGCCACAGATTAATTTCCCCATGTGCACCATTGCGTCAATGCCTAGGTTACCAGAACATTGCATTGAATATGCCAGAATCTTACAGTGGCCAAAAGAAAAGCCATTTGGAGATACCAGCTTAGATGGAGACAACCCAGAGCACATCCAGTGGGTGTTTGAAAGAGCCCAAGAAAGAGCTGCAGAGTTTAACATTACAGGAGTGACATACAGACTCACTCAAGGAGTTGTGAAGAGGATCATTCCTGCTGTGGCATCAACTAATGCTGTTATTGCTGCTGCCTGTGCCACGGAGGTTTTTAAGATTGCTACAAGTGCGTATATTCCTTTAAACAATTACATGGTCTTCAATGACGTGGATGGACTGTACACCTACACTTTTGAAGCTGAACGGAAGGAAAATTGTTCAGCATGCAGCCAGGTGCCTCAGGATCTTCAGTTCTCTCCTTCTGCCAAATTACAGGAGGTTTTGGAGTACCTTACAGAGAACGCCTCACTACAAATGAAATCCCCGGCTATCACCACAACTCTGGAAGGGAAGAATAAGACGCTGTATTTGCAGTCGGTAAAGTCCATCGAGGAACGAACCAGGCCAAACCTCTGTAAAACACTGAAAGAGCTGGGCTTGTCAGACGGACAGGAACTGGCTGTGGCTGACGTCACCACGCCTCAGACGGTTCTCTTCAAGCTCAATTTCACCACCTGAACAATCCTTACAGCACTCAGCACTGGCGACAGATGGACTGCATCCCAATGCAGTAGCACAACTAATGATGTAAATAATATGAGTGAGGTCTCACTTGTGGGATTGGTTTGGTTGTCTTATGAAGATGGACTCATTTCTCATTAAGCATTGTTTTTTCTATTAGTATGTTGTTTACTTCTTGATGTATTTGTCCTGTTTTGACTTATTATATTGTAGCTATTTCCCTGTCAATCAAAGGAGAATAATGATGTGCACTGTATACTCTAATAAAGTTGTATTATCATGGTTGTA

Function

GO: NA

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66135 lncRNA downstream 87389 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 113041 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 141621 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 152111 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 162679 13355117 ~ 13357805 (-) True LOC120558463
TU66283 lncRNA upstream 128334 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 128334 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 220222 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 512538 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 591784 14118981 ~ 14125759 (-) True smim29
XM_039801896.1 mRNA downstream 925 13510651 ~ 13519559 (-) True LOC120559852
XM_039801895.1 mRNA downstream 925 13513857 ~ 13519559 (-) False LOC120559852
XM_039800979.1 mRNA downstream 72720 13445243 ~ 13447764 (-) True LOC120559332
XM_039800978.1 mRNA downstream 76538 13437589 ~ 13443946 (-) True LOC120559331
XM_039799472.1 mRNA downstream 88761 13414941 ~ 13431723 (-) True nfascb
XM_039800754.1 mRNA upstream 4682 13531879 ~ 13534915 (-) False lmod3
XM_039800753.1 mRNA upstream 4682 13531879 ~ 13534914 (-) True lmod3
XM_039801772.1 mRNA upstream 8204 13535401 ~ 13559677 (-) True LOC120559773
XM_039801774.1 mRNA upstream 8204 13535401 ~ 13552293 (-) False LOC120559773
XM_039801771.1 mRNA upstream 8204 13535401 ~ 13552291 (-) False LOC120559773
TU66001 other downstream 267012 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1081759 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1128813 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1297482 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1351275 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 613183 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1004927 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1318141 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1318141 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2753847 16281044 ~ 16283856 (-) True G50217

Expression Profile