RNA id: XM_039800758.1


Basic Information

Item Value
RNA id XM_039800758.1
length 5005
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC120559208
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8883251 ~ 8933289 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtctgtgtgtgagtgacagcTGGGAAGCCTCCGCCCAGTACCGCGCTACAGCCAGGCTGCCTCCAGCCTCCACCCGCTACCAGGAGCTGCAGGAATGACCGATAATATCCCCCTACAGCCCGTGAGACGGCCGAAAAGACACGACGGTAAACACAGAAATGGGTGCTGCCCGTGGTCGAGATGCTGTGGCATGGGGGACTTCCGTCCCCGCACCGTGTGGCTCGGCCACCCAGAAAAGAGGGAGCAGAGGTACCCAAGGAATGTCATTAACAACCAGAAGTACAACTTCTTCACCTTCCTGCCTGCGGTGCTGTTCCATCAGTTCAAGTACTTCTACAACTTGTACTTTTTGCTTTTAGCTTGCTCTCAATTTATCAATGAGCTACGCTTGGGTGCCCTCTACACCTACTGGGTCCCGCTGGGTCTTGTTTTGGCTATTACCATCATTAGAGAGGCAGTTGAAGAAATAAGATGCTACATTCGAGACAAAGAAATGAACTCTCAGATTTACAGCAAGCTTTCGACAAGAGGCACAGTGAAGGTGAAAAGCAGCGGCATTCAAGTCGGAGATCTTATAATCGTGGAAAAGAACCAGCGTGTTCCTGCTGACATGATCTTTTTAAGGACCTCTGAAAGAAATGGATCCTGTTTCCTGCGGACTGACCAGCTGGATGGAGAGACGGACTGGAAACTACGCCTCCCAGTGGCCTGCACACAGAGACTGCCAACCGCTGCTGACCTTCTACAAATCAGATCATATGTGTACGCAGAAGAACCAAACATTGATATCCATAACTTTATTGGAACTTTCACCAGGGAAGATGGAGACCCCCCAGTCAACGAAAGTCTCAGCATTGAGAACACCCTGTGGGCCAGCACCGTAGTTGCCTCCGgcACAGTGGTGGGGGTTGTGATTTACACAGGCAAGGAGCTGCGCAGTGTCATGAACACCTCCAACCCGAGGCACAAGGTGGGTTTGTTTGACTTGGAAGTGAACTGTTTGACCAAGATCCTGTTTGGGGCCCTTGTGGTGGTGTCACTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGTTGGTACCTCCAGATCGTTCGCTTCCTGCTGCTCTTCTCTAACATTGTGCCGATCAGTTTGCGTGTCAACCTGGATATGGGAAAGATGGTTTTCAGTTGGATGATTAAGAAAGACTCTAAGATCCCTGGGACGATGGTGAGGGCGAGCACCATACCTGAACAGCTTGGACGCATCTCCTACCTGCTGACTGACAAAACAGGAACTCTTACTCTGAACGAAATGGTGTTCAGGCGCCTCCATCTTGGAACTGTGGCATATGGGATGGACTCGATGGATGAAGTACAGAGCCACGTGTTCAGCGCCTACACACAGCCCAGCCATGACCTTCCAGCCTCCAGGGCTCCAGCAGCCACCAAGGTCCGCAAGACCATCAGCAGCAGAGTTCACGAGGCAGTGAAGGCCATCGCCCTGGTGCACAACGTGACTCCCGTGTACGAGGCCAACGGTGTGACGGACCAGGCCGAGGCGGAGCAGCACTATGAAGACACATGCAGAGTTTACCAGGCCTCCAGCCCAGACGAGGTGTCGCTGGTGCAGTGGACGGAGAGTGTCGGTCTGACACTGGTAGGAAGAGACCAGTCCTCCATGCAGCTGCGGACCCCTACTGGACAAATCCTGAACTTCACCATCCTGCAGATATTCCCCTTCACCTATGAGAGCAAGAGGATGGGCATCATAGTGCGAGATGAGTCTACAGGAGAAATCACCTTCTACATGAAGGGTGCTGACGTGGTGATGGCAGCTATCGTCCAGTACAACGACTGGCTGGAAGAGGAGTGCGGGAACATGGCGAGGGAAGGCCTGAGGGTCCTTGTGGTCTCAAAGAAGTCCCTGACAGAGGAGCAGTATCAGGATTTTGAGGCCCGGTACGTCCAGGCCAAGCTCAGCGTCCATGACCGCTCTCTGAAGGTGGCCACAGTGATTGAGAGtctggagatggagatggagctGCTGTGTCTGACTGGGGTGGAGGACCAGCTCCAGACGGATGTGAGGCCAACCCTGGAGATCCTCCGCAACGCAGGCATCAAGGTTTGGATGCTGACAGGAGACAAGCTTGAAACGGCCACATGCACCGCTAAGAACGCCCATCTGATCACCCGCAACCAGGACATCCATATCTTCAGACCCGTGACAACACGAGGGGAAGCCCACCTGGAGCTCAACGCTTTCAGGAGAAAACACGACTGCGCGCTCGTGATATCAGGGGACTCGCTTGAGGTCTGTCTGAAATACTACGAGTACGAGTTCATGGAGCTCGCTTGCCAGTGTCCCGCTGTGGTTTGCTGCCGGTGTACCCCCACTCAGAAGGCTCAGATAGTCCGACTGCTGCAAGAGCGCACAGGAAAACTCACCTGCGCCGTAGGGGATGGAGGAAACGATGTCAGCATGATCCAGGAAGCCGACTGTGGCGTGGGAGTGGAGGGAAAAGAAGGAAAGCAGGCCTCGCTGGCCGCTGACTTCTCCGTGACTCAGTTCAAACATTTAGGTCGTCTCCTCATGGTCCACGGGCGGAACAGCTACAAAAGGTCTGCAGCCCTCAGCCAGTTTGTCATCCACAGGAGCCTGTGCATCAGCACCATGCAGGCGGTCTTCTCATCTGTTTTCTACTTTGCTTCAGTCCCACTCTACCAAGGATTCCTGATTATTGGCTACTCCACTATCTACACCATGTTCCCTGTTTTCTCCCTGGTGTTGGACAAAGATGTTAAGTCAGAGGTTGCCATGTTATACCCAGAATTGTACAAAGATCTCTTGAAGGGCCGACCGCTATCTTTCAAGACTTTTCTAATATGGGTCCTAATAAGTATCTATCAAGGGAGCATCATCATGTACGGGGCGTTGCTGCTCTTTGAGTCCGAGTTCGTCCATATCGTTGCCATTTCCTTCACCTCTCTGATCCTGACGGAGCTGCTGATGGTGGCCCTCACCATCCAGACGTGGCACTGGCTCATGATAGTGGGCGAGCTCCTGAGCTTGGCCTGCTACGTCGCCTCGCTCGTCTTCCTGCACGAGTTCATTGACGTTTACTTCATCACCACGGTATCGTTCCTGTGGAAGGTGACTGTCATCACGCTGGTGAGCTGCCTGCCTCTTTACATCCTCAAGTACCTCCGCAGACGCTTCTCCCCGCCCAGCTACTCCAAGCTGACCACTTAAAAGACTGCGAAGGAGACTGTTGGGGAAACAGAAAGGCGCCCCTGTCTTCGTCCAGCAGAGCCTGCGCTTCTACCGGAGGAGTCAAACATGGATTCATCCcctttttaatttgttgtgAAAAGTAACACGCGGAAACGCGAAAGACGGGGACAACTTAGTCAGGGACAGGTCGCTTACTGAGAGGGAGAGTTTGTGTTTAAAAGCAGCGTTGCTTGCTACACGTGTTTGATGCAAAGACTAACCGATGATTTCTCTCTGTGGAGAAAACACCTGCAGTGAATTGTAGGTTggtagttagttagttaaacCGAGCATAAAAAGCGTCCTGaacagaaaatgtaaatatgtaatgTATAAAACACGCTGCTATTTAGCCTAGTATGTGATCAATTAAGGGACAGAATCAGTTCAGTAAATTATGCAGATCCGGTTTGTTTTATAATGTCTCAAATTCATATCAAGGGAAGTAACTGGAAAAGTTGGATGTCTCTCTTCCTCGGAGCTGTACCGTAGATGTGTTATTTGGGCTGGAAATACATTTTCTCCAGTTTCCAGTTCCATCTGAAATTAGTCAAAGCGTTAACATTGTTAGACACTGAAATAGACGTAGCATTCTCACTCAGGACTCGATTCACACTCTCCTCAAACTGATTTCAAAAATGGAGTTTAAGAATTACAGTAtgtggtgaaaaaaaacaaaaaaaaaaaagtttactgGCTAGAGTAGACTTTGCATAAAACACACGTCTGcaagtttgtgtatttgtttgtgcgtCACGGCGATGGTCCAGCCCGACACGGCGGACGTGGTGTGGTGGATTATTTTTAGCATGACCCCGTGGTGTCTGGTATTAAATCCGTCTTTGTTTTCTTGGTACGGGCCTCGAGGGGTTGTTAGTGTTTGTGGAGCGCGGTCAAAACAGCCACAAAAGGAGTGTCGGTTTATTTGGAGTCGAAAACCTTCCGCCGGGGGCTCCCGACAGCCCCTCATGCGGCTGCTCGGCAGGCCAGCACCCAGGCCACGCTTTTTCACCCAGCATTGCATGATGACTCACTGTACCAGTGACCTAAAGCCATAAGTGAAAACCTTCTGCGACCCGAGTTCagctccccccctccctttcaTGTGGTCTAATCCAGGGGGCCCCCTCATTGCTCACTTCTGCTATAACCTCCATAGTTCAGctgggatggaagaaaaaaagggatCAAATCTCCCCTCGGTGAAAATCCAATGTGAACATTGTCGATAAGCAGTACCGCACGTTGAGAGAAAGAACAGATATGTTAACCACAGCTCATATTTCAATTCGCTGGTGGAGATACTGTAAATAATCACCAACTAACAGAATAACATGGCTacactctttctctcacttatTTCAAATGACTTTGAAAAAGGATTTCAATTTAGTTGTAAAACTTGAATTAACTTTTCTTATATGACTTGATTAACCTTAATGTGTCGACCCAGGTGTCCTAAGTAATAATTTCTCTCCTATGTTCAACTCCGTTGTTAATCCCTACTGACTTCAGTACGCAGTTTGCACAGAATTTTGTTTTGTACAACCGATCAATTCTATTTTTTATGTCGTAATAGAATCGCAAAAAACATTAGGCTAAAATGATTTAGTtgcttgttttttattattatttattaacgTGTTATTTTATGGTGTTGATTGCACTGAAATGGGCAAAACAAAAAGGGAGAATTGCGTTGATGTCAATGTTGTGATGATGATTAATAAATCTTGTGTTTTCTATT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639096.1 lncRNA downstream 136739 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 175286 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 178540 8704391 ~ 8704711 (-) False LOC120559289
TU64266 lncRNA downstream 228932 8611698 ~ 8654319 (-) False G48128
TU64434 lncRNA upstream 143786 9077075 ~ 9088743 (-) True G48255
TU64476 lncRNA upstream 277635 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 349007 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 351628 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 445711 9379000 ~ 9386915 (-) True LOC120558858
XM_039800986.1 mRNA downstream 8129 8849910 ~ 8875122 (-) True nfatc2a
XM_039800984.1 mRNA downstream 10123 8849910 ~ 8873128 (-) False nfatc2a
XM_039800985.1 mRNA downstream 10124 8849910 ~ 8873127 (-) False nfatc2a
XM_039800982.1 mRNA downstream 42245 8792534 ~ 8841006 (-) True kcng1
XM_039800983.1 mRNA downstream 77392 8792534 ~ 8805859 (-) False kcng1
XM_039800759.1 mRNA upstream 4450 8937739 ~ 8943807 (-) True sall4
XM_039800853.1 mRNA upstream 52683 8985972 ~ 8990311 (-) False zfp64
XM_039800852.1 mRNA upstream 52683 8985972 ~ 8990311 (-) True zfp64
XM_039801629.1 mRNA upstream 235593 9168882 ~ 9175214 (-) False znf217
XM_039801630.1 mRNA upstream 235593 9168882 ~ 9175214 (-) False znf217
TU64005 other downstream 695700 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 777056 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 996401 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1384449 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1396191 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 757241 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 775042 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1091705 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1709430 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2955652 11888941 ~ 11891046 (-) False srxn1

Expression Profile