RNA id: XM_039800760.1


Basic Information

Item Value
RNA id XM_039800760.1
length 5659
RNA type mRNA
GC content 0.42
exon number 9
gene id b4galt5
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18160174 ~ 18190215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGGCAGTCCCATTCATAGGGCTGGTAGGCAGGCAGGCAAAGCGCAGGAGCGGTCACACACCATCACCGACGTAGTGTGTGAGACAAATGATGGTCCCTCACTGAAAATTCCAGGCCAGGCTAAACTGCGCTATCATCAGCCGTTTCGGCATAGGATATACCGGCAACTAAAAGCGAAACATCCTCTCAAGAATGGAATGCGAATGTCTTGGTTAGGTCCTCTCCTGCGCTGAATGCCTGCCGCGGATATAGACTTGACTTCCTCGTCGCCTCGCTCCTCATCGCTGCCGCAGACAAGCCCCTCTACTCGATTTATTTAATCCAGGCTGTCCGCCGACCACTGTCTTTGGCATCTGGACACATCAGAGCTGGTCTATCGTTGTTGAATTTaacgtgcctgtgtgtgtgcttgtgctgCGTGTATAATGCCGACACATTTGCGTTTCCGGAGAAGGTCATTCCTTGGgcttttattccttttttcacTGTCCACCTCCGCATTGTATTTCATCTACTCCGCCCCCGGAATCGTGAATGAGTATGTGTTCATGGTTCAAGCCAGAGGGATCCAGATCAGAGAGAACGTGAAGAACATTGGGGCGCAGGTTCTGGAGCAGGTGGTGAGAGGGGCTTACAGCATCAATGGCACAGACTATGCCTATGACTTCAACGTGAGCGAGAGTGATGCTCCTCCCACCACATACCTCCCTGAGGGCTTCACCTACCTCCCTTCTCAGGTTTGCCCTGAGAGGCTGCACACCATGAagggcagGTTGGAGGTGAATATGAGTGAGGTGTCtttggaggaggtggagagatCCTTGCTGGAGGAAGAGCCTTACATGGCCCAAGGAGGCCACTGGAAGCCCAACGACTGTTTACCCCGCTGGAAAGTGGCAATCCTAGTCCCGTTCAGGAACCGACATGAACACTTACCCATTCTTCTGAGACACCTGGTGCCAGTGCTGAAAAAACAGAGACTCCAGTTTGCCTTTTATTTCATAGAGCAGttGGGCACGGAGCCATTTAACCGAGCCATGTTGTTCAACGTGGGTTACAAGGAGGCTATGAAGGACCTGGACTGGGACTGTCTGGTCTTCCACGATGTGGACCACCTCATGGAGAACGACAGAAACTACTACGGCTGCACAGACATGCCCCGACACTTTGCAGTCAAACTCGACAAGTACTCCTACATGCTTCCATATAATGAGTTCTTCGGTGGTGTCAGTGGCTTGACGGTGAAGCAGTTCAAGAAGATTAATGGATTTCCAAATGCATTCTGGGGCTGGGGAGGCGAGGATGATGACCTCTGGAACAGGGTGCAGTTTGCCAATTACACAGTTAGTAGACCACACGGAGAGCATGGGCGCTATATGTCAATTCCACATCACCATCGTGGGGAAGTCCAGTTCCTAGGAAGGTATAGTCTACTACGCCACTCaaaggagagacagaaagtgGATGGTCTTAACAACCTAAACTACTCCCCCCTAGTGTCCAGGAGACCTCTCTACACCAACATTACAGTCAGCTTGAGCAGAATGCTTGCACCCATAGCTGACTACTGACGTAGGAACAGCTGGACTGCAAAACACCTGGGAATCAAAGTCCTCTGGGACATCAGCCATATCTCACCAGTGGCAGCACTGCTTAGAACGTTTTAGTTGATTGATTCTTTGCTGAATTTCTTTAGTTTGTATGCAAAAAAGGAGACTCAAATAAGTATGTTGGATAAATCATATAAGAAATTAAGGATAAATGCTGCACTTGCTTGTGCCACAGTCCATCACTCCTCTCATCTGGGCTTAACTAGTCGTCAGTCTTGCCTTTTGCACCATTTTGGCCTTcagcattcattcattcattcattcattcattttctaaTTCAGTCAATGATTAGCTCAGCCCTACACTATTGTGCTTGTTTATTAAAATAGGCCatgatacacacgcacacaatagTTTGACTTACATGTGCTGACCTGGTCCCTGAGGCTTTGATTTTTACTTTGCTCTTGCACTTCTTATTTTCATAAATGCAGTAAGCCTATTAAAACATTTGCATGCCCACACGATACAGCAACTTTTAAACTGAGTGGACTCTTGCAGCTGGTTCTGCAGAAGGCTTGCCAAATCTACAAGTGAAGAAAGCAAGAGAAAATGATATAAAGTGTGAGTGTTTTCGGtcatgtatactgtatgtgaaataGTTTATCTTGACTTTAGAGAATATTAATACCTTAATCATCTCTCACCGACTATTTTGTCCTGTGAACATACCATTTGAAGACTAGGATGTTTGTGTTTGCATAGTTGAATTGGATGTTCTGGCTGCCTGCATGTGGCTATGTTGGAGAGCAATGCTCACCCTGTTAGCAATAAGCTGTAATATCAGACAGCAGAACTTAGACCTGACTTCTTCACTATACAGATGCAATAGCACGGGTGCTATCATGCCCTTATTGGACGACCGAGAAGGAGTCACTGCATATGCAAACTTCACATTCAACACACCTTTGCCTAAGCAAACATGCCACCCTTTTCAGAACctgtgtatgtttctttgtgtgtgtatataagtgAGGGAGAGCTATGCAAATGGCCTGTATGTATCCTGTTGTCAGTGTAAGGTCTTCAGGGTCACCTCTAGGAGACTTCACCCCTGAACCTCTAACTGACTGACTTTAGACCTCACTTTGTGTGCGGTGTGCAAGTCTAGGCCAGGAAGAGATAAACAGTTGCCGTTTGGTTTTTAGATCCCACATCCTTAATGTTTATTCACCTTCATTTTTTACAGGAGAGAATTGGTGGTGGAGAATACTTGATTGCCGTCCCTGTCACTTGTGTTTACAGAAGCTTTTGCTTTGTTATTTTTCAGATTGTCTAGTGTTTGTAATACTGTTTGCCAGCCCCCCTCCACCATGGCTGCTGTGAGAACTGTATCTTCAACAACCAATGTATGGCtgcctttacatttttttaacagacaCTTCTTTATCCAGACATGGTAGGGGAAAGCGGATGTGAATGCTTATCTTACACGTCACGTAATAAACCATTGATTAGCTTCGTTAGTTTCTGGCCAAGCTTGGCCAGTGAGTTTGTTTGACTGACAGCACTCAATACGGCTGTTGCGAATAGGGGTTGGGCTAAAATGTCCCTACTCTGATTTGTGTTTGACAGTGTTGATGTTGAGTAAAATATCCCGTTACTGTAAAcgttcatttaaaaaagaaatgaaacctGCAGACACTCTCTCTTCACTGTCTTGTCCTCTAGTCATGCAGCTACTTCATTTCACATAAATCGCCTTGTATGCATTTCTTAAGATGTATCTTTTGAGGGGAGATGTGGGTGGTTGACAAACTGTTGTGTTTCCACAATGAAATAAGAAGTAAAGAGGCTGGacctcattttatttatttgatcttttatggattattttcttattgtaattgttcaggttttttttttttttcttgcggttgatatgatgatttaataggTGACATATGACAGACTGTGTTAGATGCACTGAAACTTGTagttatgtgtatttgtgtgggaTTGTGAGGTTCAGGTctgtgtaaacaggaagctgttttatttcattaagcCGCAGATTTCCTCTAAAGAAATGAATAGCTGGTTTTGATGAAATGGACGTGTATTAATCTGCTGAATAGACACGTTGAAGGAGGCCATTTTGTGTGACAACCACAGGAAGCGCAAAACTCCTAATCAGAAAATGCTAGTGGTCACCGTCTTTCACTGGGCACCTCCTTTATACTAATTGATAATCAATGGTGCTGACCTTCCAGAGCTCCCTCTGTGGGAGTCTCTCTCTACGTGCTTACTGGAACCATACTTAACATCATAAAGGCTAGTATCAACAGGCAAAACATCCCTCTACAGCATATAGGTGGCAAAATATATTCAGTGTTTTTACATCCACACATTTGTAAACCTGCTGCCTTTTCATCCAGCCAGATGAAGCTCATTTGTATATTTGTTGCTCTGGTTCATTGCCACAAACAGAAACGTGGGTTTACCTCCTAGCCAAATACTCAGCAGGTGCCCAGTGGAAGTGATGAACAGTAGCaccatttgtgttttcttttccatGTGTGTTTGAAGAAATGGCTAAACCTTTCAGAGGTCTAACTGTCCTCCATCTTTATCCtgagtttattttgttttccagcaCTGATATGAAAATGATTTATAGTTACCTGGTTGTGAACAACTCAcaggttattttttttctagttCTTGACACTTACATGATacactgtatattattattttttcttgttttcattgctttaaaaaaaagctagATGGACATATAGCGGAAGCCAAATGGTTTTAGTTTAAGTGTTCAGGTGAAGATTCAGATGCGGAGCGACCTCTCAATATACAGATGTCCTCTGGATGACATAGATATTTTAAGAGTCAGTATTAGGCTTTATACTTCACAGTGTGGAACATGCAGCTGCATCAGCCAACACCATAATCAACAAGATGGGTTTTTCACCATGACTAAGTAACTGGGGCAAATCGGTCAGCTCTCTCttgctttttatttaaatccaaaaatggaCTGTTTTAAGTTTGTGATAAGACAGTACATGGTCTCAGTCCAGACCAAGACCAAGCCTGCTGCTCACTAAAGCGGCTTCATTGTACCATAATCTCACCTGTTCTGATCCATTCTGTACCAGTTTAAATGAAGGGACCCGTGCTTTGGGCATCTGACAAAACTGGCAGCCTTAAAGCTTTTTAATTTATTGCGGTGTTTTTtcactcaagtttttttttataagcaaaaatatttaaattgaaaaaaaagtgcatatCAAGAAAATGATCATTGTAAATAttgttgtgtgtagtgttttagaAGTTCTTTAAGGTCTTAAATCACTACAGATGCTAGCATAAAGAACAAGGCTTTGGAGTGATTTGGCTGGGGGTTTATCTGGTGCCATTCAAGTGCTAGTGAAGCTTACACAGCGACATCAATGTTTTTACATCACTGCTTCCCAGCACAGcctttgtttttaaaataattattaaaatatccTTATCCCATACATTTTTTAGATTCCTCTCACAATCTCTGAGGTGCTCTACATTTTAGAGGCCTCCCTGTACTTAAAATGCTGGAAGTGTAGAAGAGACATATCATGGCAGACGCTCAGTGTCCTTGTTTGTGAATGGGATGTCTCTTTGATAGTGACAGCAGGATGGGTAAGGTGTAGGTCAGAGGAAAGCACTGCAGAATAGCGATGTGTCAGCCAAAAACACCGTATGCTTACAATGCAATGAATCACAGGCACCCAAACCAGCGACACAATCCACTCTAAAATtcacacaaattatttttttgtatgaaaGCTTACTATTAAAAAAAGATCCACATTGCtcaattaaaaatatatcttCTCTGATTGTAAGGAGAGCAATTCTCCTTGAATTGAAGCCATTTGAAGCCACTTGTCAAAACTTGATGTCAGCCTTATGTGGATCTGTTTGTGTATCGGCATATTATCTTTTGATTATTGAAATTTGTATGATGGAGATTTTCTTTTATACCATCATTGTTATTGTCAAAGTACACCAATAAAATGAAACTTGTAAAAATACAGTAA

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0048840 otolith development biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67916 lncRNA downstream 58602 17974755 ~ 18101572 (-) False samd10b
TU67935 lncRNA downstream 102825 18054019 ~ 18057349 (-) True G50808
TU67928 lncRNA downstream 118770 18040409 ~ 18041404 (-) True G50803
TU67915 lncRNA downstream 135872 18003674 ~ 18024302 (-) False samd10b
TU67914 lncRNA downstream 168503 17974755 ~ 17991671 (-) False samd10b
TU67983 lncRNA upstream 49644 18239859 ~ 18240070 (-) True G50848
TU68002 lncRNA upstream 93961 18284176 ~ 18284510 (-) True G50867
TU68004 lncRNA upstream 99667 18289882 ~ 18290636 (-) True G50869
TU68007 lncRNA upstream 108761 18298976 ~ 18299354 (-) True G50872
TU68012 lncRNA upstream 114100 18304315 ~ 18304637 (-) True G50877
XM_039800428.1 mRNA downstream 149632 17974293 ~ 18010542 (-) True samd10b
XM_039800357.1 mRNA downstream 189261 17936494 ~ 17970913 (-) True znf512b
XM_039800323.1 mRNA downstream 231004 17915256 ~ 17929170 (-) False uckl1b
XM_039799288.1 mRNA upstream 145186 18335401 ~ 18340591 (-) False spata2
XM_039799289.1 mRNA upstream 145186 18335401 ~ 18340457 (-) True spata2
XM_039799494.1 mRNA upstream 413429 18603644 ~ 18611600 (-) True dhx35
XM_039799496.1 mRNA upstream 423114 18613329 ~ 18618762 (-) True rab5if
XM_039799500.1 mRNA upstream 446360 18636575 ~ 18668749 (-) False plcg1
XR_005639183.1 other downstream 273841 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 470414 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1876318 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3306357 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 690150 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1509558 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1511115 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1516464 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2130552 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile