RNA id: XM_039800785.1


Basic Information

Item Value
RNA id XM_039800785.1
length 2670
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC120559225
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14685045 ~ 14698017 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGTTTCTCCCAAACCAATAAAAACCTCTCGATTTCTTCTTTATCGCTTGAACAGGGAAGTAGGCAGGACTCGCAAACGCACACCACACACCTTCTCGACTGTTGtcagctAAAGTGTCACACCAGGGAGTGGAgtagcaacagacccctcatcctcctctttggatttgagaccAGAGAAAATGAACAACATCCCCCTCTCTCGCTCTGAGGTGTTTGGGGAGCTGAGGAAGGAGCTGTATGAAGATGTGGAGTTCCATCAGTCTGATGTtcacatcttcatcatcatggGGGCATCGGGGGATCTGGCAAAGAAGAAAATCTATCCAACACTATGGTGGTTGTACAGAGACGGCCTCCTCCCTGAGGAGACATATTTTGTGGGCTTTGCTCGCTCTGACTTGACAGTTGATGACATTCGGACTTCTTCCATGCCATACCTGAAGGTGACGGATAAAGAGGCAGAGCGGTTGTCAGCCTTCTTCAGCAGGAACTCGTACATCAGTGGGAAATACGCAGATGAGAGTTCCTTCTCCAAACTCAACACGCACATCCTGTCTCTGCCTGGAGGACCAGAGGCAAACCGTCTCTTCTACCTGGCGCTGCCACCTACCGTCTACCACGATGTTACCAAGAACATCAAGCATTGCTGTATGAGCACAAAAGGCTGGAACAGGGTGATCGTAGAGAAGCCATTTGGACATGACCTTCAGAGCTCTGAGGAGCTGTCCACTcacctctcctccctcttcacTGAAGATCAAATCTACCGTATAGATCACTATCTGGGCAAGGAAATGGTGCAGAACCTCATGGTGCTCAGATTTGGGAACCGAATCTTCGGGCCAATCTGGAACAGGGACAGCTTGGCCTGTGTTGTTCTAACCTTCAAAGAACCGTTTGGCACTCAGGGCcgagggggctactttgatgattTTGGCATCATCCGTGATGTCATGCAGAACCACTTGCTCCAAATGCTCTGCCTGGTTGCCATGGAGAAACCAGCATCCACTAGCTCTGATGATGTCAGGGATGAAAAGGTGAAGGTGCTGAAGTGCATCGCTCCAGTGTCTATGTCGGATGTGGTGCTGGGTCAGTATGTGGGTGATCCAGAGGGTGAGGGAGACGCCAAACTGGGTTATCTTGATGATCCCACAGTTCCTAAAGGGTCAACTCAGGCCACCTTCACCACCGCTGTACTCTATGTGCACAACGAACGCTGGGATGGTGTCCCTTTCATTCTTCGCTGTGGAAAAGCTCTGAATGAGAGGAAAGCTGAGGTGCGGCTTCAGTTCACAGATGTCCCAGGGGACATCTTTGGAAATCAGTGCCGCAGGAATGAGCTAGTGGTGCGTGTGCAGCCCAACGAGGCTGTCTACGCCAAGATGATGAGCAAGAAACCTGGCGTCTACTTTAGCCCTGAGGAAACTGAGCTGGACCTCACCTACAAGAGTAGATACAAGGATGTGAAGCTTCCAGACGCTTACGAACGTCTCATCCTGGACGTCTTCTGTGGGAGTCAGATGCACTTTGTACGCAGTGATGAACTAAAGGAAGCATGGAGGATCTTCACACCTCTTCTTCATCACATAGACAGAGAGAAGCCCAAACCTCTTCCTTACAAATACGGAAGCCGTGGCCCACCAGAAGCAGACGAGCTTGCAAAGAGAGTTGGATTTCGCTATGAAGGCACTTATAAATGGGTCAATCCTCACAGACTGTGATTTTGGTTAGATGAGGGAGGAGTAGAGGTATGATAGTATGAGGAGTGCAGCAGGGTAAGTGAGCCGTCTCATTATCCAATACTGGAGAGTAGCAGAACTTTTACTCGGGTATGGCAATTATTCCTTGGAGCCAGTTCATCACGCATTCAAAAGAGAAATGTGAATTTATGTGGTCATCATGGGCATATACCAGCTTTTGaggtagttttttttctttttttcccttcatatattacatatacagcaagttttcttttctttttgaggTGGGACCAAGTCACTTGGAGagggaacaaaaaaaatgtttttgtgaacAAAATAACGGTCTGATGAACTAGCTCCATGTCCCTGTCTCTATTAATTGGGTCTTAATTTGTCAGGATGACTGAGTAACAAGAGCagagcaacaacaaaacactccGCTGAGTCATGCTCACTCAGCACTGTACCAAAGATGGGAACTGAACACAGCAGAGTCGAGAAACAACAGGAATGATTGTTCACCAGCTGTCACTCTTAATAACCATTGTGATTGTAATACTATTATGCTTTGACTGCAGTTATTAATCGCACTTAGTGtaatttatttgtatgcctCCTCTTTAAGATAAATAGACACTGTGGTTTGCAAAGGGCAAAGCATTCATACTGGAATAGTCTTAAGTGTCCTTATGGACATACAAAACAAGCTTTATGTCTTGGTTAgtagcctccaactgagcttcattccctttttgtttacatgtttTCTTCTGAGTTTAAGTTACTGAAGTTCATTCCATATTTCAAAGTATATTTCAAGGCAGCAGCAGTGTCTACCACAGGTCAACAGtgaatgtctttgtaatgacgtACTGAATACTGCTGTTAACTGCACACTTGTATGTGAAGCTTGCTACATTCCCACTTCTTGTAATAAACTAGTTTTGCTTCTCTGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66562 lncRNA downstream 1060 14682710 ~ 14683985 (-) True G49807
TU66555 lncRNA downstream 11197 14673628 ~ 14673848 (-) True G49802
TU66554 lncRNA downstream 13044 14669453 ~ 14672001 (-) True G49801
TU66514 lncRNA downstream 140413 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 259430 14416391 ~ 14425615 (-) True LOC120558545
TU66616 lncRNA upstream 147440 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 164897 14862795 ~ 14865747 (-) True G49862
TU66654 lncRNA upstream 186248 14884146 ~ 14885386 (-) True G49876
TU66656 lncRNA upstream 190877 14888775 ~ 14889514 (-) True G49878
TU66660 lncRNA upstream 204191 14902089 ~ 14902859 (-) True G49882
XM_039800751.1 mRNA downstream 64906 14616611 ~ 14620139 (-) True spryd4
XM_039801487.1 mRNA downstream 94207 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA downstream 94208 14565817 ~ 14590837 (-) False col2a1a
XM_039800136.1 mRNA downstream 133487 14539788 ~ 14551558 (-) False map3k12
XM_039800087.1 mRNA upstream 9520 14707418 ~ 14750021 (-) False LOC120558823
XM_039800085.1 mRNA upstream 9520 14707418 ~ 14750021 (-) True LOC120558823
XM_039800515.1 mRNA upstream 107207 14805105 ~ 14814207 (-) True ddx23
XM_039801574.1 mRNA upstream 125808 14823706 ~ 14833931 (-) True LOC120559665
XM_039801430.1 mRNA upstream 207153 14905051 ~ 14920772 (-) True LOC120559597
TU66513 other downstream 150440 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 539823 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1431573 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2246320 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2293374 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 147440 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 147440 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1583146 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2990217 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3141646 17839544 ~ 17886333 (-) False zbtb46

Expression Profile