RNA id: XM_039800788.1


Basic Information

Item Value
RNA id XM_039800788.1
length 7032
RNA type mRNA
GC content 0.57
exon number 42
gene id plxnb3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37743984 ~ 37941970 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCGCCGCGCGGAGCAGAAGCAGGGCGGGGTCTCTGTCGGACCTGTTGTGTGGCTCTCGGTGCGGATCGTGCAGGTTTGCGTGCGTCTCTTTGCTggactctctctctccgtggGGGTTTCTGGAAGTCTCACCGGGGCCGGTTAGACCCCCGGCGGATCGCCGAGCAGCCCAGCCGAGCTCAGGAAAACGTCCTCCTGATGAAGAAggttcctcctcttcctcctcacatCACAGTTTCCTCCTCAGACACGCAGCAGGTTTCCTCAACAGgtaaAGAGGAGTTGCCATGTTGGCCTCCTCCATCCCCCCtactctcctcttcttcctcctcctcctcctcctccccccttccTCCCACCCAGCCGATGCCGTCCCGACCTCTGACCCCTCGGTGCGCTGGGTGGATCTCCTCGGCGCCGGTCTCTCTCACCTGGTCCTGGACCCGGCGGGGGGGCGTCTCTACGTTGGGGGGGTCGACCACCTGTACCAGCTGACCGCAGACCTGGAAGTGATGTCACACGTGAGGACCGGGCCTCACCTGGACTCGCCCGACTGCCTGCCCCCGATCGTGCTGCAGGACTGCCCCTCGGCCACGCCCACTCACAACCACAACAAGCTGCTGCTGATGGAGCCGgcgctgggggggggggcaggcagCCTGATCGTCTGCGGATCGCTCTATCAGGGGATCTGTGATAAGAGGAGTCTGTCCAACATCTCTCAGCTCATCTACCAGACCTCCAACCCCGTGGACACGCAGTACGTGGCCGCCAACGACCCCCGAGTCTCCACCGTGGCGGTGGTGATAACCACGGAGAACAAGCAGGAAGGCGCCCCCGGGACGGGCGGCGCCGGCGTCCTGCGCCTGATGCTGGTTGGCCGAGGCTACACCAGCAAAGGTCCCGGCGACATCCCACCGATCACGACGCGGCGCCTGTCCCCGGTGGTCCCGCCTCGCCGGGCGTTCTCCCAGGAGGAGGAGCTGGGCAAGCTGGTCGTGGGGAGCTACTCCGAGTACAACAACCACTTCGTGAAGGCCGTGGCGCACGGCAGCCACGTCTACTTCCTGTTCTCGCGGCGGGACATGTGGCACAAGAAGGAGTACCGGACGTACGCCTCGCGGCTCTGCACCTCCGACCGCAGCTTCTACTCGTACGTGGAGgTCCCGCTGCTGTGCGGCAACGGCTACAACCTGGCTCAGGGGGCGTGGCTCGGCAACCACTCGGGCGAGCCCGCCCTGTTCGTCGTCATGGCGACGGGGCAAGCGTCCACGCCCGTGGCGACCGGGCGCTCGGCGCTGTGCGTCTACGGGATGGCCGAGCTGGACGCCAAGCTGCGGCGAGCGCAGGAAGTGTGTTACACGGAGGGAGGGCGCGGCAGCAGCGGGCAGGAAGAGGCCTACATCGAATACGCTGTGTCATCGAAATGTCTGAAACTACCACAGGACTCTCTGTCCGAGTACCCCTGCGGGGGGGAACACACCCCGAACCCCATCGCCAGCGCCGTGCCGCTCCCCGCCACGACCACCGTCACCGCCACGACCCAGCTGACTGCTGTTACCACGGCAACAGAGGCGGGGCACACCATTGCCTTcctgggagacagagagggacgaCTGCACAAGgTGCTGGTGCGCTCTGATGGGTCAGGGGATCTGTACGGCAGTGTGTTGGTGGACAGCGGCAATGCTGTCAGTGCTGACCTCCTATTGGACGACAGCCAGCAGCACGTTTATGTTTTAACCAACAGCAGGctgTCGAAGGTTCCTGTGTCGTCatgtgagagacagacagactgtcGGTCCTGTCTCGCTGTCAGAGACCCGTACTGTGGCTGGTGTGTCCTGGAGGGAAGATGTTCCCGCAAACATCAGTGTCAGCGCCACGTGCAGCCCAACCACTGGCTCTGGAGCTTTGAACAGACCAATCAGTGTGTGACAGTGCAGAGTCTGcagccagccaatcagagcaaagACGAGCAGACGCAGGTAACGCTGTCAGTGGTCCAGCTTCCCGACCTGACTGAGACCGAGTCTCTGTCCTGTGTCTTCGGGCTCCTCCCACCTCAGCCCGCCATCGTCACGGGAACCAGCATCACCTGTCAATCACCCGCGCCGGAGCTCCTCCCACCCATGCTAACAGGAAGTGATCACATGATCCTGCCCGTGTCGCTGATGTTTGGTCATGTGACCGTCACCACGGGCGACATGACCTTCTACGACTGTGGAGCTGTGAGCCAACTAAACCAGAGCTCCCAGTGTCTGGCGTGTGTCAGCAGTGTGTGGGGGTGTAACTGGTGTCCTCTGGATCAACTCTGCACTCACAAccacagctgtcccaaccaGCACATCATCCTCAACCAGAGAgagtCTCCCGGTCCCACATCCTGTCCTCTGGTCTTCGCCCTGCAGAGTTCTGCCTTAGTGCCGTTGGGCCTGAGCACCACTGTTGTGCTGCGGGGACGAAACCTGGACGTCTACACTgATGAAGCCCAGTATCTGTGTGTCGTGGAAATCGAAGGAGTCCAGTTCAATCTGACGGCTGCTGTGGAGAAAAccgacaacacacacaccttcacctGCAGCCCACACCAgtttCAGTATGCTGTCAGTCAGCTTCAGTATTCGACGGCTGTCTATCTGCGCAGAGGAGAGAGACGCATCGACACCTTACCTGGCCTCCAACTCCAGCTGTACGACTGCTCAGCCGGCCAATCAGATTGCTCACAGTGCAGGGCGGTGCCGGAGGAGTACGGCTGCGTGTGGTGTTCAGGAAGTTGTGTTTACAACCAATCCTGTACCAGCGTACCTGCAGAcacctgcccccctcctcaGATCACACAGgtacTTCCTGTCTCCGGTCCGTTGGAGGGCGGAGTCCTGGTGACCATCACGGGGTCAAATCTGGGAATGAAGTACCAGGATGTACTGGGCGGGGTCACAGTGGCAGGTGTTCAGTGTCTGCCCAGACCTGAAGGATACCAGATCTCcaccagggttgtgtGTGAGCTGCAGGCCAGTGGGAAGCAGAGGGAGGGGCCTGTCCTGGTTGCCGTGGGAACAACTCCACCTGGAAGGTCGACCCAGATGTTCACCTATCAGGACCCGCAGCTCCTGGACCTGGTCCCTGATAAAGGTCCCGTCTCCGGGGGAACCAGACTGACCATCAGAGGACGCCAGCTGCTGACGGGACAGAAGTCTGACCTCAGGGCCTACCTGGGCCCCCAGCCCTGCTACATtGTGGAGGAGGTGAATGATACCCAGCTGGTGTGCCAGACTGGTCCCAGCAACCAGACCGGTGGAGTAACTCTTCGGGTCCTGTTCGGTAAAGCCGAGAGAACCGTCTCCAACGTTACCTTCCGTTACCTTGACGACCCCGTCATCACCGACGCCACGCCAGCGGAGAGCTTCTACGCAGGCGGCCGTGTCGTCATGGTGACGGGCAGGAACCTGGGCGTGGTGCAGCAGCCAATCATATCTGTGTGGGTGGAGCCTGTGGCGGTCCAGAGGGTGAAACGGAGAAGACGATTGGCTCTGCTCACCGCCAAGCAGCAGCTGGTGTTCAACAGCTCCATGACAACGgtgtCAGAGCCCTGCTCTGTCCTGTCGTCCTCTCAGATGACCTGTCTGACCCCCGCGGTGACCCCAGAGGTCAAAGTGAAGGGCGTCTGGTTTCAGCTGGACAACGTCCGAGTCCACTACGAAACCATCaagggtAAAAGCTTCACCTATTATCCCAACCCAGAGTTCTTTCCCCTGAACAGAGAAGCTCCAGATGCTCCGTATCGCTTCAAACCAGGAGGAGTGATCGCCGTGGAGGGTCAGCACCTGACCAGAGCCATATCGAGACAGGAAGTGACGGCTCGACTGGGAGATGGCGAGTGCGAGGTGAAAACTCTGGACAACACTCACCTGTACTGTGAACCCCCGGAGATCCAACCGCTGAGCGTGGACGACAGCAGCGAGCTGCCCTGCCTCAAGgTGTTCATGGGAAACCTGAAGGTGGACCTGGGATTGGTTCAGTACGACAGCGACTCTCTGTCTGTCGTCCCATTGGCTGCTCAGATCAGTTTGGGGGCGGGAGCTGCTGTCATCATCCTGTCAGTGCTGGTCGTCATCCTCATGTACAGgaggaaGAGTAAACAGGCTCTCAGAGATTATAAGAAGGTTTTGCTGCAGTTGGAAACTCTGGAGATCAACGTGGGAGACCAGTGTCGCAAAGAGTTCActgACCTGATGACGGAGATGATGGACCTGAGCAGTGATGTAGGAGGACCTGGTCTCCCTCTGCTGGACTACAGGACCTATGCGGAGCGGGTCTTCTTCCCCGGCCAGCAGGTGGCGCCGCTGAGCCGCCAGCTGGACCTGCCCGAGTCCCGCAGGCCGACGGTGGAGCAGGGCCTGCAGCAGCTCAACAACCTGCTCAACAACAAGCTCTTCCTCACCAGGtTCATCCACACGCTGGAGGCCCAGCAGGGCTTCTCCCAGAGGGACCGGGGCTACGTGGCCAGTCTGCTCACCATGGCCCTGCACGATAAGCTGGAGTACTTCACCGAGGTCATGAAGAGTCTGCTGCAGGACCTGGTGCAGCAGTACGTCGCCAAGAACCCCAAACTCATGCTGCGCCGTTGTCGAAGAAAGTTGACCAACTGGATGTCGATCTGCCTCTACTCCTTCCTCAAGgaggTGGCTGGGGAGCCTCTCTACATGCTCTACCGAGCCATAAAGTATCAGGTGGATAAAGGGCCAGTGGACTCGGTGACAGGGAAAGCCAAACGGACGCTTAACGACAGCCACCTGCTGCGGGAGGACATTGACTACTGCGCCATGactcTGACAGTGTTGGTGAAGAATGGAGTCGAAGTTCAACCTTGTCCTGTTAAAGTGCTCGACACAGACACAATCACACAGGTGAAGGATAAGATCCTGGATCAGGTCTACAGAGGAGCTCCATTCTCTCAGAGACCAGCAGCAGACAGTCTGGACctggAGTGGCGTTCGGGTCAGGCGGGTCACCTGACCCTGTCAGACGATGATGTCACAGCGGTGGTTCAGGGGCGCTGGAAACGGGTCAACACTCTGCAGCACTACAAGGTCCCAGACGGCGCCACGGTGGCTCTGATTCCTCGTTCTCAGAGTTCAGGCGGAGTTGGAGTCAACCAGGTCTTCCAGACCGGAGAGAAAACGCCGATGCTGGAgggcgaggaggaggagggtctgcgTCTGTGGCACCTGGTGAAGAGCAGCGAAGATCCGGAAATCCCAAAACACAGAAAGAGCAgcatgagggagagagagagagccaaggCCATACCTGAGATTTACCTGACCCGACTGCTGTCCatgaagggGACCCTGCAGAAGTTTGTGGACGATGTGTTCGTGGCGATCCTCAGTACGAAGCGTCCTCCTCCGATCGCCGTCAGATTCTTCTTCGACTTCCTGGACGACATGGCCGAGAAACACGGCATCGACGACCCCGAGACCGTCCACATCTGGAAGACCAACAGcctCCCTCTCAGGTTCTGGGTGAACATCCTGAAGAACCCCCAGTTTGTTCTGGACGTCCAGGTGTCTGACAGCATCGACGCCGTCCTGTCTGTCATCGCTCAGACCTTCATCGACTCCTGCACCACCTCCGAGCACAAAGTGGGACGGGACTCTCCTGTGAACAAGCTGCTGTACGCCAGAGAGATCCCCCGATATAAACAGCTGGTGGAGAGgtattACAGTGATATCCACAGCGCTGCGTCAGGCTGTTATCAGGAGATGAACTCCACTTTGACTGAACTTTCCGGGagtTTTGCATCAGAGATGAACAGTCTTGTTGCTCTTCATGAACTCTACAAGTACATCAACAAATATTATgaccagATCATCATGTCTCTGGAGGAGGACAGTTCAGGGCAGAAGATGCAGCTGGCCTATCGGCTGCAGCAGGTCGCCGCCCTGGTGGAGAACAAGGTCACTGACCTCTGATGACCTCTGATGACCTCTGACCCCGTCAGCCTGCCCCCAGGAAACGATGACCTCTGACCTCGCGACCCTGAAGACACTCGGAGCTCCcgctgaggaagaggaggaggaagaaagcCCTTCTTGTTGAACATCTTCAGCAGCTCTGAGAGACTGAAAATCATTGGACTCCTGTTAACACTGTCTTcctgctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggggatATATGAGGTTTTTATAGTCAGACTCAGGCGATGCCAGTTCTTTCGATTCCTTTACTCcctggagacaaaaaaaaatgctttggtTGAAAATGACAATCTAACCAATCAGATCAGAGAACATCACTGTCACCTGCTGCCTTGCATACGTTTCCCAGAGTTCCCTGCTGTTCTGCTGTCTGTGCGGAGACAGAAAGCACAATTTGAATAGTCTCTATACTGATCACTAGTTATCGATGTGTTGTCCTGCTGATCTCAGACATGCTGGATGTTTTTTACCGACAGTATTGCTGAACAATATTTTTTAGCTTTTACTACTGAAAACCAGCACGATTATGAAGCTTTTAACATCCCAACATTTAGGGAGTTTTACCGAACGCAATAACAGAATCAGGGAGTGGttttttaaaatcacattttcagTGCGACTCCAGTTTCTGACGTCTCCAAGCTCTAACTAAATATTCTCATCAGGTAACTTCAGGACCTGCACCGGTTCTCATGTCTTTCCAGTCTTCCTCAGTTCCAGGTTGAGTCCAGATTGACTCATCGGGGTTCTCAGGTTTGCATTAAATGCCAGTGTACATTTCGACTTGCTGAGTTTTTGTTTATTAGCCAATTAGCACGTAGCAGAATCGTGGCTTCGAAGAAGGACGAaggtaacctgactccgccagattggatcgcttcgcatttgctcggcatatccatctgggaactttccgttggagaacttttgggaaggggcgaaa

Function

GO: NA

KEGG:

id description
K06821 PLXNB; plexin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74656 lncRNA upstream 9484 37680137 ~ 37734500 (+) True G55845
TU74672 lncRNA upstream 22841 37685804 ~ 37721143 (+) False G55853
TU74669 lncRNA upstream 71058 37666598 ~ 37672926 (+) True G55852
TU74668 lncRNA upstream 82167 37639074 ~ 37661817 (+) False ccdc120a
TU74658 lncRNA upstream 135705 37607679 ~ 37608279 (+) True G55846
TU74714 lncRNA downstream 8353 37950323 ~ 37950660 (+) True G55888
TU74728 lncRNA downstream 50208 37992178 ~ 37992671 (+) False srpk3
TU74745 lncRNA downstream 131616 38073586 ~ 38123920 (+) True G55908
TU74755 lncRNA downstream 163563 38105533 ~ 38144212 (+) True G55917
TU74761 lncRNA downstream 174016 38115986 ~ 38236855 (+) True G55919
XM_039800474.1 mRNA upstream 10587 37716912 ~ 37733397 (+) True LOC120559052
XM_039800473.1 mRNA upstream 27979 37674109 ~ 37716005 (+) True abcd1
XM_039800472.1 mRNA upstream 93929 37620630 ~ 37650055 (+) True ccdc120a
XM_039800471.1 mRNA upstream 130977 37542874 ~ 37613007 (+) True LOC120559048
XM_039800514.1 mRNA upstream 215607 37519828 ~ 37528377 (+) True abt1
XM_039800475.1 mRNA downstream 11774 37953744 ~ 37993017 (+) True srpk3
XM_039801731.1 mRNA downstream 331290 38273260 ~ 38302427 (+) True mecp2
XM_039799294.1 mRNA downstream 420512 38362482 ~ 38377654 (+) True rtca
XM_039800482.1 mRNA downstream 470092 38412062 ~ 38439413 (+) True cxxc1a
XM_039800963.1 mRNA downstream 499432 38441402 ~ 38473917 (+) True hdac6
TU74653 other upstream 10708 37686769 ~ 37733276 (+) True G55842
TU74652 other upstream 28003 37686769 ~ 37715981 (+) False G55842
TU74631 other upstream 228613 37509624 ~ 37515371 (+) False G55835
TU74629 other upstream 228849 37509624 ~ 37515135 (+) True G55835
TU74630 other upstream 228849 37509624 ~ 37515135 (+) False G55835
TU74758 other downstream 169201 38111171 ~ 38167000 (+) False G55919
TU74760 other downstream 169201 38111171 ~ 38167000 (+) False G55919
TU74841 other downstream 438657 38380627 ~ 38392578 (+) True LOC120558454
TU74819 other downstream 494110 38436080 ~ 38437223 (+) True G55956
TU74811 other downstream 629211 38571181 ~ 38580336 (+) False irak1

Expression Profile