RNA id: XM_039800845.1


Basic Information

Item Value
RNA id XM_039800845.1
length 3140
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120559249
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11986410 ~ 11999445 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGATAAGGATATTTAAATACAGATTCACACCCGGAGAACACGGAGCGGATTAtaatctcttaaaaaaaaaaaaaaaacacattctgcTCTTTAACAGCCATCGGCGGACGGCGGACGGCGGCTACACCGTGTAGGAGGAGCCAGCGGCGTGTTTCCGCTACACCAGGCCGAGAGAGTTAATCTATGCTGCCGTACTGAGAATTACAGGATATTGGTGGAACAGTTCGCAGCTATTGCGAGACACTGTTAGAGTACAAATTGTTTAATCACCGGGGAGCTGCGGTTGTCCATATCTGgggaaaaagaagaggaaggagtgGCAGCTGGACTGTCAGCAATGGAAGCCGAGTTTCGGGAAATCGATGACAACGGGAGTTGGAGCGCCATTTATCAGGAGATTCGTCAGCAGTCATGTGAACTCCCTTGCAAGGTTGCCAAATTACCTGAAAACAAGAATCGGAATCGTTACAGAGATGTTAGCCCATTTGATCACAGCAGAATATATCTGCAGCTGGGTACGAATGACTACATTAATGCCAGCCTGATAACAGTAGAAGAGGCAAAGAGGAACTACATCCTCACTCAGggacCCCTTCCAAATACATGTGGCAACTTCTGGGAGATGGTGTGGGAGCAGAGGTCCCGCGGTGTGGTGATGCTGAACCGAGTCATAGAGAAAGGATCTGTGAAATGTGCCCAATATTGGCcccacagagaggagagagatgctaTCTTTGAAGATACCAATTTCAAGCTCACCCTCATCTCAGAGGACATCAAATCTTACTACACAGTCCGTCAGCTGGAGTTGGAAAATCTGTCTACTCAAGAGACGCGTGAGATTTTACATTTTCACTACACCACTTGGCCTGACTTTGGGGTACCGGAGTCTCCTGCCTCCTTCCTTAACTTCCTGTTCAAGGTGCGGGAGTCGGGTTGTCTGAATTCAGACCAGGGACCAGTGGTGGTGCACTGCAGCGCCGGCATCGGACGCTCTGGGACCTTTTGTCTTGTGGACACCTGCCTCTTACTGATGTCCATCCGTAAGGACCCGTCTTCAGTGAGTATTCGTGATGTGCTGCTGGAGATGCGACGCTATCGAATGGGCTTGATTCAGACCGCAGATCAACTTCGCTTCTCCTACCTTGCGGTCATTGAAGGTGCAAAGTACATCAAGGGAGATGCATCTCTGCAGgAGTGGAAAGAGCTCTCAAACGAGGAAGATGATCCTCCAGAGTTCACCCCtccgcctcctcttcctcctcccagAGACCCCCACAACTGCAAAGTTGAGCCATCCTTTTTCCCCGAAAATGTTAAGATCATTCAACAGATGGAGATCCACAGTCTGGGGACCTCACAAGAGTCGGCGCTGCGAAAGAGGAACATTGCCGCCCCCCAGCCTCCTCCTGCCGGTGCTGAGCAGCTCGATGACCACATGGGTATCGTAGATCATACCTCCAAAGCTCCAACCAAATCCCAGCAGCAGGAGACGGAGGAGGCAGCGGAGAAGCCAAAGGAAAGCCCTCCTGTGCCGGGGACTTGGTCCCCTCTACTAACCAACGTGTGCCTGTGCACGGCGCTGGCTCTCAGTGCTTACGTCTGTTATCGAGCCTGTTTCCACTGATGTctgtccttcctcctcctttctgttcctccctgtctctccaCTGATGTTGCAAAGTGGACTAGGCTTGCCAATCAGCCTGCTTTGACTTTGGTTTTACTCTGCGAGTGAGTGGATTATTTGGACTTCAGCAGATTCAGGTTCACCAGGGGTTGAGGTGTTGAGGGGTTGGCTGGTTGGGAATAACAAGCTTCCAATCCTCATTACCCACCCAACCATTCTTTCAATATGTCACCATGGATGCTCAGGGCCTCCGTTTTTCAGGTTTGACATCCCAAATATGTGTGCCGACTGAAACGCAGACTCAACAGACGATACGTGTCTGTTGAGGAAAAGGGTTTTGTTTTAGCTCCCCTGTTTTGTGAACCAGGATGAATGGCCTGTCAGCCAATATTTTACACGCGTCTCCTCTCTTATTTACTAAATGACACTTGTATGCGTTCTTCCATTTCATCCTTTACAGATATGTCCGTTAGGATTTCacctttttcccccccacctttttctttcttttcctgacACAAATTATCAGAAATCAAAGAGTCAGATTtttgaccaaaaaaaataaataaaaaaatgccagTATGGGAGACACTTAAAATAAATCAAGTGTTATTTTGTTATGGGTCCATATTAAACCCAACAGTAAGGTGAAGTATGGGTTATGGGCAGCCCTGTGCCCACTAGATAAGAGATGCATGCTGGTGTGGGCATTGAATTATCTGTCCTCACTGGCGGCCTGTGTAGGTCTGCAGGAGGCATGCTAGTtgagtacatacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtacatgtaCATTTGCGTGAGTGGTAGTTAGTGGAGCTTTCTACTGATGCTTGAGTTAAATCTACTCAGTGAGAAATATTAATATAACATTTACAGTACGTCAAATATGAGATTTAGACTGAGTTGCCTCCTGGTAATTGATTCCCTCTGCGTTTTCTCTCCCTGGTGGCTCAACAGTGACAAAATGGTGCAGGGACAGGGTGGCATGTCCCATTCTCCATTAGCCTGGCATTCTCAAATTGATATTagctaaatcttttttttcaataattttaaTCAAGTTATAACACCTGGCTTTTACTTTTAACTGTTTTGGAGAACCTCTTTTTAGTCACAGTGGATACAAATGCGTGGAGGCTTTTCATGCCAAATGTGTAACATAGCCTGAATGCAACTGTTGTATAGTAATGTGGGTTCAGTTACACACAAGAATGCCAGCTTATTGAGACACAAAGTTAGCTAACCCCCAACTCTTTTCGCGAGCAATACAAATACTTAGTAATGTGTCACCCTTTACTTTATCAAACTCTTGAGTTTGAACAGGGAACCAGGGATTTTGAACAAACCAAAAATCAAACACCAGCACAGCGatgaaaacaatacactgtagtGATGATCCGTTTCCGTATCATGGCGTGGCCCTGAGCTGGCAATATTgttttgtatgatttttaagtaagtttttgtttttagcatGCT

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05696 PTPN1, PTP1B; tyrosine-protein phosphatase non-receptor type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65457 lncRNA downstream 7375 11959379 ~ 11979035 (-) False peds1
TU65449 lncRNA downstream 95364 11885965 ~ 11891046 (-) True srxn1
TU65307 lncRNA downstream 370701 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 379796 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 385902 11600292 ~ 11600508 (-) True G48907
TU65465 lncRNA upstream 3822 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 120213 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 120307 12119752 ~ 12121550 (-) False G49084
TU65542 lncRNA upstream 141490 12140935 ~ 12141414 (-) True G49092
TU65570 lncRNA upstream 147283 12146728 ~ 12147033 (-) True G49112
XM_039800847.1 mRNA downstream 22381 11959754 ~ 11964029 (-) True peds1
XM_039800849.1 mRNA downstream 29019 11953175 ~ 11957391 (-) False LOC120559253
XM_039800848.1 mRNA downstream 29019 11953175 ~ 11957391 (-) True LOC120559253
XM_039800850.1 mRNA downstream 29896 11953175 ~ 11956514 (-) False LOC120559253
XM_039800835.1 mRNA downstream 40900 11940260 ~ 11945510 (-) True slc52a3
XM_039801026.1 mRNA upstream 104446 12103891 ~ 12119146 (-) True LOC120559362
XM_039799911.1 mRNA upstream 147969 12147414 ~ 12169209 (-) False dnmt3ba
XM_039799913.1 mRNA upstream 147969 12147414 ~ 12169209 (-) False dnmt3ba
XM_039799910.1 mRNA upstream 147969 12147414 ~ 12169209 (-) True dnmt3ba
XM_039801834.1 mRNA upstream 221289 12220734 ~ 12223028 (-) True ppdpfa
TU65448 other downstream 95364 11888941 ~ 11891046 (-) False srxn1
TU65038 other downstream 1331592 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1960585 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2262276 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2288303 9690530 ~ 9698107 (-) False olfml3a
TU65528 other upstream 127441 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 127441 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 150349 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 221292 12220737 ~ 12223002 (-) False ppdpfa
TU65659 other upstream 389536 12388981 ~ 12391671 (-) True fkbp1aa

Expression Profile