RNA id: XM_039800850.1


Basic Information

Item Value
RNA id XM_039800850.1
length 1533
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC120559253
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11953175 ~ 11957391 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAAATTTGAGGACATGAATAGCGTCAACCAAAGGGGCGTTAAAGTCCCTCGCAATTTCCGGCTCCTGGAAGAGCTGGAGGAAGGCCAGAAAGGTGTGGGAGATGGAACAGTGAGCTGGGGTCTGGAGGACGATGAAGACATGACCTTAACACGGTGGAGAGGGGTGATTCTTGGCCCTCCAAGGACGAGCTATGAAAACAGGATGTACAATCTGAAGGTTGAATGTGGGCCAGAATACCCAGAGTCACCACCGTTTGTCAGATTTGTGACAAAGATAAACTTGAATGGCGTGCACACCTCCAACGGTGTGGTTGACATGCATGCAGTGActgcactggccaagtggcagAACTCCTACAGTATCCGGATGGTGCTGCTGGAGCTGCGAAGGCTCATGACCTGCAAGGAGAACATGAAGCTTCCTCAGCCACCCGAGGGCCAGATCTACAGCAACTGAGCCCCTGCTACTTTTGCCTCCATATTTTTCTCCCTTCCCTCCCCCAATTCCCAACTCTTCTGTTTTGCTTTTCATCCCTTTATCCCCATCCTCTCCGCCATCCTCTTCAACCTCTTGCCAACACCTTGCTGTgagcacacacagagcagagtACTTTTACAATTATTACTTATTACAGATACATGCAAacatacgtacacacacacacacacacacacacaatcacaataaCGGACAAATGCAAatctacatacacatatatctTTATACACACACTTATTAGCGTTCATGAGTCATTCCAggccctcccctccctctcccatcACTGGAGCTCTGGGTGGACTCAATGTGACAAGTCCTCAGTCCACACCAGATACGATCATTCGAATACTGTACTGTtactaatctttttttttttattatttgtttaaaaaaaaaaaaatgcagattgTACAATAACATAAATAATCTTATTGAGTGTACCTCCTCTGTGTGTTGCctttttgtaacattaaaaaACGGCCACTTAACATTAACGCACATAGTTCACTAAACATACTGTTAGTTATTAGATAATCTTCAAGGTGTACAAATAAAGAAAACCCAAATGCATTCAACTTGGCAAATAATGTGAAGTATGTATTGTCATGTGGCCAGATGTCTAATGAAATATTTTCCTCCGTGTGTGATTGCACAGAATAAATGTTCTCACGCAGTCCTGTTGTAAATGCATGACTGCAGCTCAGCAAGGTGCCTGGAAGTGATCACCTTTTGTCacacatggctttttttttttcttctatgtAAGAATTGTCCAAAGTGAACATTGTGTATCTATACCACTATATCTGATTATAATATGCATAGTAGCATAGTATACAAGTCTACTGTAGGTCTGCAGAAGTCCCAGTTTTAAACCGTGCTTGACAATATAGAAGTGAAATCAGCTACCTCTTTTGGTCCTGTGTAACGTCAGAGGAGTTCATCTGACTTGTGAAACTGTATTTGCTACTCCATGTGAAAATTTGTTTAACTTTCGCCACTTCTTTCATAAAACTTAATTCATGCTTTTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65449 lncRNA downstream 62129 11885965 ~ 11891046 (-) True srxn1
TU65307 lncRNA downstream 337466 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 346561 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 352667 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 374187 11576539 ~ 11578988 (-) True G48886
TU65457 lncRNA upstream 2865 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 46753 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 163144 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 163238 12119752 ~ 12121550 (-) False G49084
TU65542 lncRNA upstream 184421 12140935 ~ 12141414 (-) True G49092
XM_039800835.1 mRNA downstream 7665 11940260 ~ 11945510 (-) True slc52a3
XM_039801638.1 mRNA downstream 45562 11898818 ~ 11907613 (-) True scrt2
XM_039801936.1 mRNA downstream 62036 11888817 ~ 11891139 (-) False srxn1
XM_039801194.1 mRNA downstream 72555 11878352 ~ 11880620 (-) True tcf15
XM_039799397.1 mRNA downstream 81714 11865707 ~ 11871461 (-) True LOC120558412
XM_039800847.1 mRNA upstream 3240 11959754 ~ 11964029 (-) True peds1
XM_039800845.1 mRNA upstream 29896 11986410 ~ 11999445 (-) True LOC120559249
XM_039801026.1 mRNA upstream 147377 12103891 ~ 12119146 (-) True LOC120559362
XM_039799911.1 mRNA upstream 190900 12147414 ~ 12169209 (-) False dnmt3ba
XM_039799913.1 mRNA upstream 190900 12147414 ~ 12169209 (-) False dnmt3ba
TU65448 other downstream 62129 11888941 ~ 11891046 (-) False srxn1
TU65038 other downstream 1298357 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1927350 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2229041 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2255068 9690530 ~ 9698107 (-) False olfml3a
TU65528 other upstream 170372 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 170372 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 193280 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 264223 12220737 ~ 12223002 (-) False ppdpfa
TU65659 other upstream 432467 12388981 ~ 12391671 (-) True fkbp1aa

Expression Profile