RNA id: XM_039800853.1


Basic Information

Item Value
RNA id XM_039800853.1
length 3633
RNA type mRNA
GC content 0.50
exon number 6
gene id zfp64
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8985972 ~ 8990311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCGGACAAACGCATGCTTATCCCTCTGCCGTAAACCCGACGTAGCATGACGTAAACCCGATTTGTATCCGTGTTGTCAAGAGAAGTAAGACTGTTAATGAATAATGCCGTTTATATCCTATACCGCGGTAGAGTTCGTGTTTGAAATGTGTTAATAGTCGTGCTGGCTGCGTCTCCAGTCGAGCCGGTGCAGTTTAACAACATGGTGGACGTCGTGTAGGCTTTTTGAGGAGCCAGAAGATGAGTTGATCCCCAGCAAAACAAGCTCGAAAATGGCAACATACAACGCAGaagTCGGTGCAGGACAATCTGTTGTGGTGGAGGTGAGCCCAGACATCCACATCTGTGGCTTCTGCAAGCAGCAGTATAATAATTTTGAGATCTTTCTCGCCCATAAGCAAAATGGATGCTCCCTAGCGACCTCTGACCCACCATCCACCACTGCAGCAGCCACGCTCACAGATTCCGCCACCGAGTTTGTTTTCGAGGAAACCTACCAGACCTGTGTTATGAGAGGTGTCAAAAAGATCCTGACCAAAGCACAGAAAACACcttccaaaaaattaaaaccttcCCTGACTTCAAAGAGACACAGCTGCTGTTTCTCAGGTTGCACTTTTAAGACGCAATATGGCCAAAAAGACATGGAGCGGCATCTCAAAACCCACACCGGTGAGAAGCCATTTGAATGTGAGCTGTGCCACAAGCGCTTCAGTCGCCGGGACAAGCTCAACATGCACAGCCGCTCGCACACAGGGGAGAAGCCGCACAAGTGTAAACACTGTCCCTACGCGGCGGCCGACAGCAGCAGTTTGAAGAAGCACCTGCGTATCCACTATGACGAAAGGCCGTTTAAATGCCAGATCTGTCCGTACGCCAGCCGCAACTCCAGCCAACTCACCGTCCACCTCCGCTCGCACACTGGGGATGCACCTTTCCAGTGCCAGCTATGTGACGCAAAGTTCAAAATCAACTCGGACCTGAAGAGGCACGTCCGGATTCACTCCGGCGAGAAGCCCTACAAGTGTGACTTTTGTGAGTACCGCTGCGCCATGAAGGGCAACCTGAAATCTCATGTTCAGATCAAACACGGCACGGAGAACTCCTTCCGCTGCGAGCACTGTGATTTCCAGTGTGCCAGCAAGAATGACCTGCGGCAACACACGCGAGAACACCAGCCCATGCAGGCCATCCAGTGTTCCGAGTGCACTTACTCCTGCGCCAGCAAGGGGGCGCTCAAAGTCCACGAGAGGATCCACTCGGAGGAGCGCCCTTTCAAATGTGACTTCTGCAACTTTGCCTCCAAGCAGCGCAGCAACCTCGTCATCCACAAAAAGAAGTGCCACTCGGATAGGCCTGAGAAGAAGGGCGGCTGCGGGAAAGGCGGCAGAGGTGGAGGGACGAGCGGAGGAGGAGGGGACTCTCCGAAGCCTGTCGCCTCCAGATTTCGGGCCAAACTAGAAGCGGCTCGAGCGTTCTGCTGTGACTCGTGCGACGCTTCCTTTGTGAGGGAAGACTCCCTGCGGAGCCACAAGAAGCAGCACAGAGACGCTCAGAACACGTTGCAACTCCAGCTCTCCGCCCCGGCCGATGCGGTCAGCTTGGTCGCAACGtcgcagagcagcagcagcagcagcgcccgGCTGGAAGTTCCTATCTCGGCTGACTCGATGGCTCCTTacagcagcgcgcagctcaaaATCATCGTCTCTCACCCTCTGGGCCAGGAGAACCGCTTAATTCCAGCTGGTGTGGATGGTCAGCATAAGACCAACATGGTCCTGTTAAGCCCAGAGAACCAGGACATGGTAGTCAACTCCATGATCCAACAGGTCAACCTGCTGGCGCCTGTGCAAGCCCTCGGGTCGTCCCAGATGCCAGAAGGTACTCTCGAACCCCAGACGGTCCTGTTGACGCAGCTCGGCCCCGGCGACGGCAACGACCCGCTCCACCAGGCCCTGCTAGGGACGGCCGTAAGCGCTCAGGACCCCGGCAGGGGCTCGCAGACTTTCATCACGACCTGCTCCGAGCTGGGGGGCCTCAACGCCCTGATCCAGGAGGGTGGCACGGAGGTGACAGTGGTGACGGAAGGGAACGCCGCCATGTTGACCGCAGCGGCCGCGCCCGGCATGGCGTGCGGCCCATCGGAGGACGTGTCCAAGCCGGCAGGGACAGTGATGGTGGTGGAGAGCGCCTTGTCCTGTGAGGAAAGTGCCATGCTGGTGCCAAATATCAGCCTGGGCAGCCAGAATGTGGTCATCCACGCTGTTCCACTGATAGTGTCCACTCAGCAACAGCTCTCTCCTCACACACTCtactcagatacacacacactggaagGCATCCCGCAGTGAGTGGAGGCTTCGACGGCTTTTTCTGAACATAGAAAGACTGTTAACTGCATCatgggtagggttgggtatcgtttgggttttgtTTTACGATACTGGTAGCCCGGTTGagaccagacccttctcagctgggtctggggaaggttcattcacagcccatttccaaagctcgaatgcctctgggcgcaattggatagacctaaaaAACCAATCCGAGCGATGaacgtcgctgcgctatcgtcatcgtgtaaagcccgcctcaacggttgtgattggtgcctcgatttggaaaagttcgtcagggttttcccaggctacggTACCGGTGATAAAACTTAACCGATGAAAAaaagagcacaaaacgacagttggtGACGtttaaagaatggcttgtttatgTGCCATATGGTCACATTTCAATgatgtgttttaaaatgtaataacggtaacttataacaataactcaTTTCACCAATCAAATGCTGTTATACAGCAAAAAGAAGAACCACTAGATcgcaaaagggtattttacaacaacattgAATGAACCATGATCTTACAAAGTGCAGTTGAAGGCACCATTAAGTCCCGTAGGTGTTGTTTCTCTGACAGCGTCTGGTGTCTCTAAGGTCAGctagtctcctctgtgtctttagctgcagactgttggactTCAAGGTGTTAGAATCCTTTCGACTGAAATACAGCCACACATAAGACCgttgaaataaaaactaaagccatcaagaaaaacaaaaactaaactgaaaccgTATTGCCAGGTTAAAAAAACTAATCAAAATAAGATCAAAATGAATCCTTTCAGTTTATAGTTTTTCGCAGAAACCGAACCGAGTTGACATTGACATTCCAGGAGATGGGGCGGTGCTGTAATCTCTTCACTGAATCGGACACTGAAGTAGCACAAAGTTGAAACAATAAACATCAAGGCTATTCCTATACAGCACCAACCATGTattctgtatgtatatatagctACATACTTCTGAGACATTATATATTAGACCTAAGAAAAACTAACTGAAACTACTGTAAAACTAAATATATCAAAACTACAACTGAATCaaaactaaaactagactaaaatgaaactgaaaattCAAAACTAACGACCATGCAACACATGCAGTGATGCTTCTGGTGCCTGTAACCATAGGCGGGGTtataataatcaaaactgggcttttttttcaaagtttttgttgagtttttgtcacctattaaacctattaaaaaaatgtccatTTTTGGGGAGTTTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639096.1 lncRNA downstream 239460 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 278007 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 281261 8704391 ~ 8704711 (-) False LOC120559289
TU64266 lncRNA downstream 331653 8611698 ~ 8654319 (-) False G48128
TU64434 lncRNA upstream 86764 9077075 ~ 9088743 (-) True G48255
TU64476 lncRNA upstream 220613 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 291985 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 294606 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 388689 9379000 ~ 9386915 (-) True LOC120558858
XM_039800759.1 mRNA downstream 42165 8937739 ~ 8943807 (-) True sall4
XM_039800758.1 mRNA downstream 52683 8883251 ~ 8933289 (-) True LOC120559208
XM_039800986.1 mRNA downstream 110850 8849910 ~ 8875122 (-) True nfatc2a
XM_039800984.1 mRNA downstream 112844 8849910 ~ 8873128 (-) False nfatc2a
XM_039800985.1 mRNA downstream 112845 8849910 ~ 8873127 (-) False nfatc2a
XM_039801629.1 mRNA upstream 178571 9168882 ~ 9175214 (-) False znf217
XM_039801630.1 mRNA upstream 178571 9168882 ~ 9175214 (-) False znf217
XM_039801636.1 mRNA upstream 178571 9168882 ~ 9175133 (-) False znf217
XM_039801635.1 mRNA upstream 178571 9168882 ~ 9174740 (-) False znf217
XM_039801633.1 mRNA upstream 178571 9168882 ~ 9174733 (-) False znf217
TU64005 other downstream 798421 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 879777 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1099122 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1487170 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1498912 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 700219 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 718020 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1034683 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1652408 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2898630 11888941 ~ 11891046 (-) False srxn1

Expression Profile