RNA id: XM_039800856.1


Basic Information

Item Value
RNA id XM_039800856.1
length 3722
RNA type mRNA
GC content 0.52
exon number 5
gene id csrnp2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11455743 ~ 11464126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGTATATATACGGCTACAGGGAAGAATTTCTTCCTCTATTGTTACATTGTAACAAACGGGGCCGGGGCGGAACGGGGAGAAAGGCAGGCGTCTTCTCGTTACGTTTGCAACATTTTGACTCCattcgattaaaaaaaaaaggaagccaAAATCCGCGTTAATGCGAGACGAAAGCGAAGTAAGCACCGCCGACTGAACCCGCCCCGGCGAGAAAAAGGATAAACGAACACAGATGTCAGCGGATTTCTACATCGCAAGCCTATCAGAAAGATAAGACATTCGGCTAATTATATTATTCATGTTAGGCAATAAATCGCAGCTATTCATATGACGTCCCTATTTCTGCCGTCTGTCCTTTAAATGGATAGGCAtgcaacatttaaataaaacccGCAGGTCTAGCAGACAGCTCCTGCTTTCTTCGTGTGTGCAGAACAATGAGCATGGAGCCTAAGTAGCCTGCTATAGTCAGATAGAAGTGTTGCAAATTGACAGTCACGCAAGCTTCCAGACCGATTACTTTAGGTTACGATTGCCCCACGGTTGCAGTCTGGATACTCTGTTCAGAGATATCGGTTTTGTACTAAAAAAGGCATCTCACAGGGCGTTGAAAGATTGATGTGCAGCTCACATTGGAAAGGGAAACGACCTACGAGTTGGTTGGAATAAGGGTCCTTGTATTCTGCCCCAGACACCGAGTTTCCATGGAGGCAGGTTCGTCCCTCAGCCTCAAACGAAGATATGAAGAGGTGGACAACAGCTCTCCATTCTCTACACCTAAGGACTCCGACGATGACATTTCCAGCAGTGACAGCGCTGACAGCTGTGACAGCCTCAACCCCCCCTCCAGCACTGCATTTACCCCCACCTCCATCCTCAGACAGCACAAGCCGTCACCGGGGGGAAAACGGGTACGTTTTGATGTGGTGACGGTGTATTACTTTCCCCGGCGGCAGGGGTTCACCAGCGTGCCCAGCCAGGGTGGCAGCTCCCTGGGCATGGCCCGTCACCACTCCTCTATCAGACACTACACGCTGGGCGAGTTTGCCCGAGAACAGGAAACGAGCCACCGGCACACTTTACGCCAGCACCTGCGCCAAGAGAAGCTCAATGCCCGCAAGATGAAGCTGACAAGGAACGGCACGGTGGAGTGCGCTCAGGCAGACCTGCTGACACTGGAGGACGTATCCGATGAGGACCTGGACGTGGACGAGGTGGAGGTGGACGACTGCTTCTTTCTTCAGCCGCTGCCCACAAAGCGCCGCCGAGCCCTCCTGCGAGCGTCCGGCATCGCACGCATCGATGCGCGGGAGAAAGCCGAGCTCCGAACCATCCGCCTCTCGCGGGAGGAATGCGGCTGCGACTGCCGCTTGTACTGCGACCCGCGCCACTGCGGCTGCAGCCAGGCTGGGATTAAGTGCCAGGTGGACCGAATGTCGTTCCCGTGTGGCTGCTCTCGGGATGGCTGCGGCAACATGGCGGGCCGCATCGAGTTCAACCCTCTACGCGTCCGAACTCACTACCTGCACACCATCATGAAGCTGGACCTGGAGAAGAGGAGGGTGCTGATACAAGGGACCGGCGACCAGTACGCCGAATCCGACCACAtgtcctccccctcctccactTGCCCCACGTCTCCGGACCTATCCTCCGTCGCCGGCCTGGACTCCGAGCTGGAGGAGAGCGAGGCGCAGACGGCGGCGGAGGTCCAGGATCTCCTGGCGGAGCAGGACATCCTGGAGCGAGAGAACGAGACGGCCGTGCTGCACCTGCAGAGCGCCGAGGAGCAGGAGAGGCGGGAGCGCGAGGAGGCGGAGGGGGAGGCGGTGCAGACGGAGCTGGGCGCACAGCAGCCTCTCTGCCTCCTGCCCGGGCAGGCGGGGGTGCCGGGGGTGGAGCAGGTCCTCCTGCAGGGGCCCTTCCCCACGGGGGCCACAGTGCTCTGCATCACTGACAACCAGGAGGAGAGCCCCTCGGCCCTCCTCAAAGACTCCACTTCTCTGCTCTACTACCAGCTGGGCCCCATCCAACCGGGGGCCTTCGAGAGCCTGCACAGAGCGCAGGAGGCGGAACAGGAGGAGCGCTCGCTGGGAGAACAGGGTTCAGGAGGAGGccaaaggaaagaagaagaagaaggaggaggaggaggaggaggaggaggaggaggagaggagtcgAAAAATGATGAGATCCCCTGCAGGCCGATTTTGGGCAAGTCTTTGACCAATGTGATCCTGCGCTCGGAGGGCTGCGTGGCAGTGGCGGAGGAGAGGCCCTCGAGCCCCCTGCAGAGCCCGGCTGGTGTGCAGCAGTGCCAACGGGAGGCGTGCTCCGAGGAAGGAGTCAATCCACTGCCTCCCGAAGTTTAGCTCTAGCTTCTCTGCAGATATTTTGCACAATAGCTTCATCTAAGATGAAAAGAAATGTACACATTTCACATTTATCACTGCTATTATCAAGAATTATTACAGGTTGCAATCTCTTGTAGTGACTGTCATTGAATTATGTGGAGAATAAGAAGTGAGTATTACAAGACctgagggggagggagggggtggggggggtgtggtGTGGGTGTGGAATGCTGAAAGCACATACAGACTACTCCCGAGAAGTAATATGGATGCAGTTACAAGGAAACATTGTACGTAATTCAGTTTAGGGGTGATGAATACGGCCTTAAtggaaaaaacattaaaaaaaaaaatcaaaaagtaaCACTTGTGTGTAGGAGTCGATGGGAAAGTACACAGCAAGTAGTGCTTTGTTAATTCCCATCGTAGCGAACAGAAAAACGCAACGTGGGAATGCTGACGTAAGCCTTTTGTTTGGTGATGATCAAAAAaaccaacataaaaacaaagctATCGATGCTAAACACAAATAGTTTTGCGGTGAGCCCGAAGCTCACGAGTCGAGATCCCTACTCGCTCACTCCCCCTTACAGCGAACCTGTGCTGTAGTCAAGCCAAATAAAGGCCTCCGATAGTATCCTCCGCTGAAAACAGACCTAATTATCCTGGAAATACTTGtttttgtgtactgtatatgcatttGCAATGTGCAAGACAGAGCCGAGGTCgctgctttttattttaaattttttaaccGTACGCACATTGTGAAGCCGAGGGCCAGTGTTGGCGGCGCTGCTGTTAACGAAGGAAAACCAACACAGAGCAGCGGCCAACACCGGGCCTTAGTTATTGCTCTTGCTCACCTCGCGCCGCTCGTGCAAATGCAGTGGATTTTTGTCGACAGAACCTCTAGTTTACCTGTAGTTCCAATGCCTATGATATTCCTTATTATTTCCTTGATTAATGTGTCTTTTGTGGATTAGATCCTGTTGGTTTGAAGTCCtgagtcttttgttttcttttgttgttgttgttgttgttgttgtttttttttggagtgAAAGGAGATCTTTTATACTGCTATAGCCGTAACCCCATGTGGTCAGTCATGTCATGCCAGGATAGATCTTCCCCAGGCCTCTCCTCTTTTAATGAATTCTACTACATTATGAGGAAGAGATGATTTCCGAATCAAGTCCGATTGCATATGAAGAATATAGCATGGGAAGAGTCAAAGAAAGTAGTTCTACAAAGTGATGTGAGGTTACTAACTTATGAAACAGATTGACAACGAACTGACTTTGTATattttagtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgcgcgtgcgtgcgcgcg

Function

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65282 lncRNA downstream 17042 11438272 ~ 11438701 (-) True G48891
TU65116 lncRNA downstream 234264 11220997 ~ 11221479 (-) True G48761
TU65111 lncRNA downstream 247126 11208394 ~ 11208617 (-) True G48756
TU65104 lncRNA downstream 306361 11149074 ~ 11149382 (-) True G48749
TU65057 lncRNA downstream 597734 10838207 ~ 10858009 (-) False LOC120558410
TU65275 lncRNA upstream 39701 11503827 ~ 11508308 (-) True LOC120558961
TU65296 lncRNA upstream 99945 11564071 ~ 11572989 (-) True G48903
TU65276 lncRNA upstream 112413 11576539 ~ 11578988 (-) True G48886
TU65301 lncRNA upstream 136166 11600292 ~ 11600508 (-) True G48907
TU65304 lncRNA upstream 141607 11605733 ~ 11606614 (-) True G48910
XM_039799536.1 mRNA downstream 34282 11382182 ~ 11421461 (-) True itga5
XM_039799552.1 mRNA downstream 95548 11348286 ~ 11360195 (-) False slc48a1a
XM_039799551.1 mRNA downstream 104545 11348286 ~ 11351198 (-) True slc48a1a
XM_039799550.1 mRNA downstream 107496 11337607 ~ 11348247 (-) True LOC120558517
XM_039800090.1 mRNA downstream 326433 10968009 ~ 11129310 (-) False plxna2
XM_039800857.1 mRNA upstream 372 11464498 ~ 11477916 (-) True tfcp2
XM_039801528.1 mRNA upstream 22939 11487065 ~ 11498064 (-) False pou6f1
XM_039801527.1 mRNA upstream 22939 11487065 ~ 11498064 (-) True pou6f1
XM_039801529.1 mRNA upstream 22939 11487065 ~ 11496970 (-) False pou6f1
XM_039801530.1 mRNA upstream 25210 11489336 ~ 11498064 (-) False pou6f1
TU65038 other downstream 800925 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1429918 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1731609 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1757636 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3349548 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 424815 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 662760 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 662760 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 685668 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 756611 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile