RNA id: XM_039800857.1


Basic Information

Item Value
RNA id XM_039800857.1
length 3163
RNA type mRNA
GC content 0.45
exon number 16
gene id tfcp2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11464498 ~ 11477916 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGTTAcggaagctttttttttcttcctgatgAAGCtagataaacaaacaaaagcaggACATATTTTATTACATATATTTAGGAGCCTGAACTAATTTAAATATGTTTCGTGGAATATATACGTTTACCAGGAATACATTGTTCCCGTGAATCCCTCATAAGTGAGGCAAAGAATAACTAGCTGTATCCTTGCTAAGCTAGCTGGCAAGCAAGCTGTACGAGCTTGTAGCAGGTTAGCTCGTCATGTTTGTTCTAGTGCTGGGGCGAAGGAGCGCGACATGATGGCATGAAACTGTCGCAGTGTTAGCTGCACTCTCACTCAAAGATTGGAAGGCTGTGGGAAAGCTTTGCGCAAGTTTGAAACGGAACTGCACTCTGTGAGAACTCCATATCGTCACCATGGCGTGGGCTCTGAAATTACCTCTCACTGATGAAGTGATTGAGTCCGGACTGGTCCAGGACTTTGATGCCAGTCTGTCGGGCATTGGGCAGGAGCTTGGAGCTGGGGCATACAGCATGAGCGATGTGCTTGCCCTCCCCATCTTCAAACAGGAGGAGTCCAACCTGCCTCCAGACAGCGACAACAAGATCCTTCCCTTTCAGTATGTTCTGTGTGCAGCTACCTCGCCGGCAGTTAAACTGCACGATGAAACCCTCACCTACCTCAACCAAGGGCAGTCCTATGAAATTAGAATGCTTGACAATCGGAAAATTGGTGAACTTCCGGAAATCACTGATAAAATGGTGAAGAGCATCATCCGTGTGGTGTTTCATGACCGACGACTTCAGTACACAGAACACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCCGGGGATCGCATCCTCGACCTGGATATCCCCATGTCCGTCGGCATAATCGACCCCAGGGCTAACCCTACTCAGCTTAACACTGTGGAGTTCCTTTGGGACCCATCAAAAAGAACCTCAGTTTTTATCCAGgtACACTGCATCAGCACAGAATTCACAATGCGCAAGCATGGAGGAGAAAAGGGGGTGCCTTTTCGGATCCAGATCGACACGTTTAAAGAGAATGAGAATGAAGAGTACACAGAACACCTCCACTCTGCCTCCTGTCAGGTCAAAGTCTTCAagCCTAAAGGTGCAGACAGAAAGCAGAAGACTGACAGAGAGAAGATGGAGAAGAAGGCGCCACAGGAAAAGGAAAAGTACCAGCCCTCCTATAAAACCACAATCCTGACAGAGTGCTGTCCCTGGCCTGAGGTCACATATGTGAGCAACTCCCCATCTCCTGGCTTcagcacaagcacacacaacaGCTTCCCAGTTGCGGAAGGGAATGGATCGCCAACCCATCAGCCTGAGCCTGTCGTTCAGGTAGCAGATAATTTGTTACCCACAGCAACGCCACAGGATGCACAACAGTGGCTTTTAAGAAACCGCTTCTCACCCTTCTGTCGGCTCTTCACCAACTTCTCAGGGGCAGACCTGTTGAAGCTGACCAGGGAGGATGTCATTCAGATCTGTGGGCCAGCTGATGGTATAAGACTCTTCAATGCACTGAAAGGACGGGTGGTTCGCCCGAGGCTGACCATTTACGTTTGCCAGGAGTCTCAGCAGGCACGGGAGCAGCAACCGAAGCATGAAAACGGAGATGCCGCCGCCAACACTTTCTTTGTATATCACGCCATTTACCTGGAGGAGCTCACAGCTGCTGAGCTGACAGAGAAGATCGCTCAGCTCTTCAACATCTCACCCAGACAGATCAATCAGATCTTCAAACAGGGACCCACTGGCATCCATGTGCTGGTCAGTGACGAGATGATTCAGAACTTTCAGGAtgaagtttgttttgttttggacACAATGAAAGATGACTCTAATGACGGCTACCATATCATCTTGAAGTGAATACTGGGCAAGAGAAAAGCATTGCTCTCTTCTTTAGACTTGATCCAGTCAGCCCCTCTAGAGCTTCATATTCCTCGCTGTTCCTGGATTATGTGGGGACGTCCTGAGAAACATCTTGAGGCTGCTAGGATGAACATGCGACTGAATCACCTGGCCCTCTTCTCACTATACCTTATTGTCTTACTTCTGAGTGAGTGACTGTTACCACAGTGAAGTGAAAAATCTCCTTCTCGCCTGCCATTGTCTCCCATAAATGGTTGCATTTTCCTCTGTCGCTTATGTCTCATGAAAGAGGTTAGAAGCACTACAACTGCTATCGCGGTTTATTTGTTAGCTGAGCATCTGGTGTGCCAAAGCTCTGTGCTTCAGAAACAGTTTGTCGTCTCTTTATAAAACCAACAACCaaataaagcaacaaaaaaaaatctaaacgaCAGAAAGGGAGATAGTTACTCTGACAGTTATTGACTTTCAGCCTGCAAAGCAGCATGATGTCTCCTCTTCATGCTAGGTTGCCTTACCGGGATCCACTCAAGGCAGTCTGCAAGAAACATGGTAGCATGATAGCAAACACAATCAAACGGTCACAAACAAAGCACCACAAGAGACATCAAATCAGCAATCAGGACATCAAGGGAAACTTTTGGCATCCAGCTGTCCTCAATAACATCTGTGATTCCTTTTTAAAAGCTAACAATTTCACTTTTCCTGGTTTGAACTGTCACTTTTGAGAAAGAAAAGCCTGTTTTGCAGATTCCCAAACACTGTTAGATCCTTGTAGTTAGTGTAGAGCTCACACTGGCACTCATGGTTGTTACTTATGAACTTTGAATGATGATGAAACACTGTCTATGTTAGTGATCACAGTGGCTACACCAGCAAACTGTCTCTGGCCCATGTGCCCCCCATCCCTatcagctttttttatttttatttttttagcacaCCAACATTTCATCATGTTTATTTTTGGCCATTTTCCAACATTATTTGTAAAtagattttaaaattttaaatttcaCAAGGAATCAtgtggcaattttttttttttaacatacttaTGTCCcttctttttattgtttttggatGTTAATACTTCAAAACAGTAATGAAAAGGAGCGGTTGGGCACACCAGAGCTGCATGTGAAGAGATCTAGTTAGTTTATGTTCAGTCCATTGTGCTGCTTACATGAAAATGATAGCTTGTCATTTTAGATATCTATATTTGCCCCATCTCATTAGCGTTTATTAAAAGACTTACCCATGTA

Function

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65282 lncRNA downstream 25797 11438272 ~ 11438701 (-) True G48891
TU65116 lncRNA downstream 243019 11220997 ~ 11221479 (-) True G48761
TU65111 lncRNA downstream 255881 11208394 ~ 11208617 (-) True G48756
TU65104 lncRNA downstream 315116 11149074 ~ 11149382 (-) True G48749
TU65059 lncRNA downstream 606489 10838207 ~ 10858009 (-) False LOC120558410
TU65275 lncRNA upstream 25911 11503827 ~ 11508308 (-) True LOC120558961
TU65296 lncRNA upstream 86155 11564071 ~ 11572989 (-) True G48903
TU65276 lncRNA upstream 98623 11576539 ~ 11578988 (-) True G48886
TU65301 lncRNA upstream 122376 11600292 ~ 11600508 (-) True G48907
TU65304 lncRNA upstream 127817 11605733 ~ 11606614 (-) True G48910
XM_039800856.1 mRNA downstream 372 11455743 ~ 11464126 (-) True csrnp2
XM_039799536.1 mRNA downstream 43037 11382182 ~ 11421461 (-) True itga5
XM_039799552.1 mRNA downstream 104303 11348286 ~ 11360195 (-) False slc48a1a
XM_039799551.1 mRNA downstream 113300 11348286 ~ 11351198 (-) True slc48a1a
XM_039799550.1 mRNA downstream 116251 11337607 ~ 11348247 (-) True LOC120558517
XM_039801528.1 mRNA upstream 9149 11487065 ~ 11498064 (-) False pou6f1
XM_039801527.1 mRNA upstream 9149 11487065 ~ 11498064 (-) True pou6f1
XM_039801529.1 mRNA upstream 9149 11487065 ~ 11496970 (-) False pou6f1
XM_039801530.1 mRNA upstream 11420 11489336 ~ 11498064 (-) False pou6f1
XM_039801531.1 mRNA upstream 11477 11489393 ~ 11498064 (-) False pou6f1
TU65038 other downstream 809680 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1438673 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1740364 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1766391 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3358303 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 411025 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 648970 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 648970 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 671878 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 742821 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile