RNA id: XM_039800860.1


Basic Information

Item Value
RNA id XM_039800860.1
length 2047
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120559259
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16961498 ~ 16972293 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCTTGAACCCCGGGCCAACTTGTTAAACTCTCTGGCAGTCTATCAAGAATCTCAGTTGAAATTTGATTTCCTGACAGTCACCCGCGGCTTGTGGACGACAAGAGTGAGAGCTGTCTAGCTATCCCGGCTAGCGGTGGGACAACATGAGCTAACGCTAGGTGTTACAACAAGAAAGTTAACCAGCTACTTCTTGCTGCGAGAAGACGAGAAACGCACCTGTCGGACGGTTATCACTCATGTGTTTCCGATAGTTAACATGTCGAATCAGCTCCAGACGGCTTTCCCGATCCAACAGCAGCCTAATCTGAACTCTGCTCCTTTCCCACAGTGTTTTGTGAAACCTTTTAACAATCCTCTTCAAATCAAAAGGAATGTAATAACAGACGATTACAGTGTAACAAGTCAGGTGCTCGGGATGGGAATAAATGGCAGAGTGTTGGAAATATTCCACAAAGAGAGTGGAGAAAAGTATGCACTAAAGatgcTGCAGGATTGTCCAGAGGCCAGACGGGAGGTGGAGATCCACTGGAGGGTGTCACCCTGCCCTCATATTGTACCCATCATAGATGTTTATGAGAATCTCTACCAGAACAGGAAATGCCTCCTCGTCGTGATGGAGTGtatGGATGGAGGTGAATTATTCAGTCATATCCAAGACAGAGGGGATCATGCATTTACAGAAAGAGAGGCCTCGGACATCATGAAAAGTATTGGAGAAGCCATACATTTCTTGCATTCCATCAACATTGCTCACAGAGACATCAAGCCAGAGAACCTGCTGTACACTTCCAAAAGGCCAGATGCCCTCCTCAAGCTGACAGATTTTGGGTTTGCCAAAGAAATCACCACTTTAAACTCTCTAGCAACACCATGTTTCACCCCTTACTATGTTGGAATGAAAAGACGGATCTGTAATGGACAATATGAGTTCCCCAACTCCGAGTGGTGTGATGTGTCTGAGGAAGCCAAACAGCTAATCTGTCACTTACTGAAAACCGAGCCCACCCAGAGAATGAACATCACCGAGTTCATAAACCATCCCTGGATTAATCAGTCAGTGAAGGTCCCACAAACGCCTCTTCACACCAGCCGAGTGCTACACGAAGAACAAGATGTCTGGGAGAAGGTTAAGGAGGAAATGACAAATGCCCTGCAAACCATGAGAGTGGACTATGATCAAATTAAAATCAAAACCATTGAAGACTCTACTAATCCTCTACTCttgaagagaagaaagaaaagtaaaaactcAGCCACACAGTCTCCAGGCTAGtgaaataaatatgttttaagAGGTGTTAACCTCaaatgattttaatgatttttggCATTTTGGTAAATATGCTTTAAGGACTTTTGAACTATGCATTGAAAAATATGCTGTGTGTGCAGTAAGGCTTATTCATGACTCCTCTCACTAGAGGAAACAAAaatctactgtatgtgttgtataTCCGGACAGTTGTAATCATTTTAATGTACATATTTGAGTGAACTTTGTTGGCGTCAACTGACAGTTTTTAGGTTGTTTTGTCTCAAGTTTTTCTGTTCTCAGTGATGAAAAACATTTAGACTGACTTTTTGCCTTCAGGGTATTGTTTAAGATAGTTTGCCAGCATCATTCACATGTGTCTTTTGCATGACCGTTACCAGAAACCACAGCTTTTGTTTTGTATGCGTACGTGATGTCAGAAGTATTTCTCCTTACCACAATATAGAGGATTTCTTTCCACATTGTGGTTTGTGTAGTATCTGAAACTCTTTTaccatgtgtagcaataatGAAACTTGCTATGCTCATGAGACGGGCGATAATTGCATTTGATTGACGAAACAGTGCTATCCACTGGACAACTGGTGCTCCTTTGGCATTTATTTTCTCCAAAGCAGTAATATAAAAGTAGTTGTATGAGGTCTGAGTGAGGCATGGAAAGAAAAGTGGACGGCCGTAAACTTTTAGATGGTGACAAGATTTACAGTGGAAGATGTTGCACATCACTATTATCATGTCTTTTAGTCTGGATTAAATCTCTCTTAATATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67417 lncRNA downstream 16526 16944771 ~ 16944972 (-) True G50443
TU67335 lncRNA downstream 246750 16714061 ~ 16714748 (-) True G50389
TU67328 lncRNA downstream 281822 16666050 ~ 16679676 (-) True G50382
TU67324 lncRNA downstream 298453 16660998 ~ 16663045 (-) True G50378
TU67316 lncRNA downstream 380516 16580076 ~ 16580982 (-) True G50371
TU67455 lncRNA upstream 91541 17063818 ~ 17064746 (-) True G50476
TU67456 lncRNA upstream 92720 17064997 ~ 17065274 (-) True G50477
TU67479 lncRNA upstream 98845 17071122 ~ 17074733 (-) True G50483
TU67480 lncRNA upstream 98845 17071122 ~ 17074355 (-) False G50483
TU67477 lncRNA upstream 100459 17072736 ~ 17074355 (-) False G50483
XM_039800862.1 mRNA downstream 1817 16954885 ~ 16959681 (-) True fmodb
XM_039801474.1 mRNA downstream 45116 16825425 ~ 16916382 (-) False LOC120559618
XM_039801472.1 mRNA downstream 45116 16825425 ~ 16916382 (-) False LOC120559618
XM_039801473.1 mRNA downstream 45117 16825228 ~ 16916381 (-) False LOC120559618
XM_039801471.1 mRNA downstream 83989 16823774 ~ 16877509 (-) False LOC120559618
XM_039800425.1 mRNA upstream 28124 17000401 ~ 17001309 (-) True LOC120559002
XM_039799620.1 mRNA upstream 107962 17080239 ~ 17098500 (-) False pabpc1l
XM_039799619.1 mRNA upstream 107962 17080239 ~ 17098174 (-) True pabpc1l
XM_039799621.1 mRNA upstream 107962 17080239 ~ 17098170 (-) False pabpc1l
XM_039799622.1 mRNA upstream 108596 17080873 ~ 17098178 (-) False pabpc1l
TU67071 other downstream 677642 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2107681 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2107681 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2426893 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2816276 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 715838 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 867267 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1908088 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2727496 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2729053 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile