RNA id: XM_039800885.1


Basic Information

Item Value
RNA id XM_039800885.1
length 3185
RNA type mRNA
GC content 0.51
exon number 32
gene id col9a3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15076829 ~ 15094038 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTTCAGCCCCATTCGGCTGGAGACTCGGGTTTATCTGGAACCTGAGGAGGCCACTCTGTGCGCCGTGTGGTAAAGGAAGGCTGCGTTGCGGACGCTGGGGGGGAGTGAGAGAGGACCTGGAACCGGGGATTTGACCTTTTCTGCAAAAACTCTGGTTTGTGAGGGCGAGCGAAGGAGCCATGGCGGTGTTCTCTGCGCTTTGGGTGCTCTTACTGTGCCAGCTTTTGACATCATCCTCAGCCCAGAGGCCAGGCCCCAGAGGAGCTTCTGGGACACCAGGACCCTTAGGTGCACCGGGAAAGGATGGCACTGATGGCAAACCTGGACCTGCTGGGCTGCCAGGGAAATCTGGTCCTAAAGGGAAACCAGGGATACCAGGGACAGCAGGAAAACCAGGCCTGCCAGGACTTCCAGGAGTGGACGGTTTGACAGGTCCTGATGGTCCTGCTGGGAAAGATGGACCCCCAGGGGAATCAGGTGACCCTGGACCTCCTGGGCCACCTGGACCTCCTGGCAGAGGGAGACCAGGAGCTGCAGGACTACCTGGAACCAATGGGTTGCCAGGCGGAGTCGGACCCCAGGGTCCAGCGGGTTTGGAGGGTCTTCCAGGACTTCCTGGACCTTCTGGCCCTGATGGACCACCAGGACTTCCCGGTACTCTTCATGATCTTAGCGGTGACCTTCTGTGTCCCGCCATCTGCCCCCCTGGTCCCTCTGGTGCTTCTGGGATGCCAGGATTCAAGGGTCACACAGGCCATAAAGGAGACAAGGGAGAGCTTGGCAAAAATGGAGAGAAGGGTGACAGTGGTCTACCTGGCCCACCAGGTATTCCTGGGACTGTGGGTCTGCAGGGCCCGCGTGGTCTCAGAGGTTTACAAGGCCCAATGGGAGCTGTAGGAGACAGAGGCCTGCCTGGTTTCAGAGGCAAACCTGGCATCGCCGGCATCATTGGAAAGACAGGTGACGCCGGAGAAAAGGGACCACAGGGTTTCAGAGGACCCAAAGGAGAAATTGGTAAAATTGGTCCCAAAGGAGGTCCTGGAGGAGCCGGACCCAAAGGGGAGCCTGGTATTCCTGGCAGAGATGGCAAAGATGGTACACCAGGGTTAGATGGCGAGAAGGGTGATGCTGGACGCCATGGGGTAGTTGGAGAGAAAGGACCAAATGGACTCCCTGGTCTACAAGGAAAGGCTGGTGCAAAGGGGTCCAAAGGAGGAGTTGGTGATCCCGGGAAGGCTGGGGAGACAGGACCTTCTGGAGAGCCAGGTATTCCTGGTGACATCGGCATCCCAGGAGAGAGGGGGATAGCAGGACCCAGAGGAGTGGCAGGAGGTATTGGACCAGTGGGCAACCCTGGGCCTCAGGGAGTGAAAGGCTTCCAGggGGTAAACGGAGCCTTGGGGGATCCAGGTCTTCCAGGTCCAACAGGAATCCGTGGAGAGTTTGGTGAAAGGGGTCCAGTTGGAGCATCTGGAGCTAAAGGAGACATGGGTGTGGCAGGAAGTGATGGTTTACCAGGAGAGAATGGCGAACCTGGTCCTTTTGGCCCAGTTGGACAAAAAGGAGAGGCTGGAAAGCGGGGTGAACTGGGACCTAAGGGTGTGACAGGCCCACAAGGAGAGCTTGGGGCTAGAGGGCCTCCAGGAAAACAAGGAATTATGGGCTTCCAAGGGGAGCAGGGTCTGCCTGGAATTGCAGGAAAGACCGGTGTACCCGGTAAACTGGCGAGTGAGCAGCACATCAGAGAGCTGTGTGGCTCAATGATCGATGACCAGATTGCACAGCTGGCGGCTAACCTTCGAAGACCCCTGGCCCCTGGAATGGTGGGCCGCCCCGGCCCTGCAGGGCTTCCAGGAAAGCCTGGAGTTGTTGGCTCTATTGGGCATCCAGGTTCCCGTGGACCACCAGGGTACAGAGGCCTGCCAGGAGAACTCGGAGACCCAGGTCCCAGAGGTGATGTTGGTGAGCAAGGTGATAAGGGATCTATTGGCAAAGCCATCGACGGGCCCACTGGAGACCAAGGATACCAAGGTCTTCCAGGGGTACCTGGAATTGTTAAAGATGGCCGTGATGGATCTCCAGGAGATCCAGGTGAGCCTGGAGAGCCAGGCAGGGTAGGTAGGACTGGGCACCAGGGAACTCCTGGAATCTGTGATACATCAGCCTGCCAGGGAGCATCGGTCGCTGGAAAATCCTCCAACCCCAAAAACCATTAAACATGACTTCCTGTAACCTGATGCCATCCACCCCAATGTGGAAGGGTGATAAGtgagggaaggaaggaatgaaagaagaaagtgatcacaaaaaaaatgtcctctTTATTTAAATACATGTATCACAAGATGGCAAGAGTAACATCAAACAGATGTGATATTTTGAGAGGAATAGAGGAACATCCCAGGAGTGACATGAATACCAGAGCAactgaaagacaaaaacatcaagatGACGTTCAGAAATAAAGTGGACAGAGGCACGGAAGAGTCCAAGAGAACAACTGCATTGCTCCAAATACTACAGTATAACTAGACTTGACTTGCAAACAACTGGAAAATGATTGATGAGTCCTTTTGTGTATAAAACTTTGTACATGTTGTTTCCATGCCACCGTTACCTTGGTTAACATCCTTCTGACAGATGACACTAAAAACAACAGTGATTGACTGAAGTGAATGTGCATGTATCATGGCCCATCAACAGGTGTCACAGGTGTTACCTCAACATACAAGCTTACAGTGTAAAATATGGAAATAGGTGACAGAGTTAAAAAGCCTCTGTCAAGGAGCTGTGTATGTATtataaaaggaataaaaaacacaaatacccAGGTGCCTTAAAATGTGTAgattaatgcattttttttttttttttttttttttttacagcatctttgttttttttttaattgcatgtAAAGTTGATTCTCTGTATTtgagaatcaaaaacaaaatgaaacttGTGGATGCATAAATCAGACATTGTAAAATAAATTTCTAAATCTTAGAAGCaaagtaatttttttcttcttttgttttttaaaaatctaCAATGACCACATCCACTATGTACTACCAGTGCTTAAATACTATTTATTATTTGTGGGTGACTGTTGTATGTACAGTAAGATGCTACAGCGACATGTTGTAAGAAAGAACAAATAAAGCCACTTTTCAGTAAAA

Function

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66771 lncRNA downstream 3405 15071837 ~ 15073424 (-) True G49977
TU66660 lncRNA downstream 173970 14902089 ~ 14902859 (-) True G49882
TU66656 lncRNA downstream 187315 14888775 ~ 14889514 (-) True G49878
TU66654 lncRNA downstream 191443 14884146 ~ 14885386 (-) True G49876
TU66637 lncRNA downstream 211082 14862795 ~ 14865747 (-) True G49862
XR_005639238.1 lncRNA upstream 38614 15132652 ~ 15137753 (-) True LOC120559280
XR_005639236.1 lncRNA upstream 119932 15213970 ~ 15214624 (-) True LOC120559278
TU66790 lncRNA upstream 124023 15218061 ~ 15218563 (-) True G49991
TU66803 lncRNA upstream 208360 15302398 ~ 15302637 (-) True G50004
TU66804 lncRNA upstream 225368 15319406 ~ 15319845 (-) True G50005
XM_039801150.1 mRNA downstream 65834 15001961 ~ 15010995 (-) False zgc:113278
XM_039801149.1 mRNA downstream 65835 15001961 ~ 15010994 (-) True zgc:113278
XM_039801140.1 mRNA downstream 84939 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA downstream 84939 14926288 ~ 14991890 (-) False LOC120559456
XM_039801142.1 mRNA downstream 84946 14926288 ~ 14991883 (-) False LOC120559456
XM_039800895.1 mRNA upstream 1151 15095189 ~ 15101900 (-) True ogfr
XM_039799839.1 mRNA upstream 573140 15667178 ~ 15681715 (-) False LOC120558694
XM_039799838.1 mRNA upstream 573140 15667178 ~ 15681714 (-) True LOC120558694
XM_039801284.1 mRNA upstream 621581 15715619 ~ 15724180 (-) True LOC120559538
XM_039801920.1 mRNA upstream 633162 15727200 ~ 15738542 (-) False cdh26.1
TU66613 other downstream 223012 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 223012 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 542224 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 931607 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1823357 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 1187006 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2594077 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2745506 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3786327 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4605735 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile