RNA id: XM_039800895.1


Basic Information

Item Value
RNA id XM_039800895.1
length 3565
RNA type mRNA
GC content 0.40
exon number 6
gene id ogfr
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15095189 ~ 15101900 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAAGGCAACATCAGTACTGCAGCCGCCAACGGTGCTGCTGTCTGACTGGAAAGACGGATGGTCAGGGCCGTCACCGTCTAACCTGAACATGCAAGTGTAACTTGATTCATGCCCGTTTATAGTGCTAAACCAGGTTACACGTTTATTTAGCCTTAGCTAGTCAAGTAACGTTTCCTTTAATCATGGAGGACGACTGTGTTTGTGAGTACGACTCGACCTGGGACACAGAGAGTGATGGAGACGACCCGGCCGGAGAGAGCCAAACCCGTCGGTCATgtcaagacaaaaacaaatctggCTGGACTCTAACTTGGCATCATACGCCCAGAAACATGAGGGCAGCAAAGGACATGCAGAACTACAGAAGAGGATATCCAAATCTTACAGATGACGAATGCTCAGAAGACAAAATGAACAATTTGCAGTTTTATCTCAATAAATTTCCCTCTGCTCCTGATGATGTTTACATTGAATCATTTCTTAAGGAATGGAAAAATGACTACAAAAGACTGGAGAGAGTTCACTCATACATTCAGTGGCTGTTTCCTCTGCGAGAGCCGGGAGTAAATTACATGGCTTCAGAACTCACCAAGAAGGAAATTGAGGTAAGTGTGTCATACAAAAACAAGTCTTTAGATTAACAGTATACCAAACCGTTAATTGTGCATTATTTGGTTGTCACCAATTTGGAAACTGGAGTGAAAAAAGAATCTCATATAAGCAACATCGGTGATATGTACTATTCGGTTTGTAATTTCAGCTTCAACTGTTTCGTCTCACACAGGAATATGCACAACAACTTGCGCATCACTCGCATCCTAAAGAGCCTCGGAGAGCTGGGCTTTGAGCACTACCAGGCCCCACTTGTGCGCTTCTTTCTGGAAGAGACCCTAGTCAAGAAGACCCTTAGCAGCGTTAAACGCAGTGTTCTTGACTACTtcctgtttgctgtcctggacAAGCAGAAACGTCAGGAGCTTGTGCGCTTTGCCTACCTTCACTTTGAGCCAAAGGATAAGTTTGTGTGGTGTCCCAGAAAGATtcagaaacaactcaggaaGGCAGAGAAAAGATCAGATTCTGTTGGGAATGGAGATGGAAAAGATGAATCGTATTCACGGAGTAAAAGCAAAGATGGAGAAGCATTTGTGCCCCAGAAAGATGATGGACTGGATAATGTTGCAAAGGCTCAGAAAGGAACTGATAAAACGGCAagtaaagacaaaaacaaactctCTGAGCCATCCCCAGGGCCAAAACCAGAAGCAGAGACTGTAGGAAATGGAAATGCAAAGGCTGAGTTTAATAATACAATTTTGGGGAATGGAAAGGACTCTACAGATGGTGTTGATGAAATGGATCAGTCGCCCAGTCCTGACTCTGTGACGGCAAAAGCTGCGCCCTGTGCTGACAGTGAGGGCACATGTACCAACGACTCGAAGGACACCACCCAGGAACCAGACAACCATATGCAAACAGATGAGGACATAGACACTGAAAAACCAccgaagaagaaaagaggtgaGAAGGTGCTGCCAAGCAACGGCTCTGCTGGGGACTTCGCCAGTGGGCAGATCGAGGAGGGAGCTGGTGCTAATAAAGCCACTGGTCAAACAAGCCCATCAGTGCAAACCCCCGCTAAGACTTCAAAACATTCACCCTCTCTTTCTTCTGGAAGAGGGGAAAAAATCCCAAGGACTGATTTTAATCAAGTGCCAGAtaaaaaggaagaggaagaaacaTCGCACGCAAATGGGTCGGCAACAAATGGGTCAGCGACGAGCACCGACAAAGTTGTGGACGAACAGACAAATGGGAAGGAGCCGCAGGATATTGACATGGAATCAAACCCCGCAAGCTCAGACCAAAATGTGGGGGGTTCGTGAATAAACTGGATGATGGGAGAAAATACATTAATTTGAGCTTATATGAAATGTAATATAGGGACAGAGTATGACCTAACATGACTTCCTGGGCCTTATTTCTACCTTCTTTGATGTTTAGATATTGTTTCTTTTCCCCTTGAAAGGAGTATATGATTTCATTAACTTGCTAAATGTGGGACTGGATGTGACTCAGTTGCCACATGGCCATAGGAAAATTTTAAAGGAAAAggctggtgatattctatatttttgttaGTCCCAAGGAAACGTCAAAACCAACAACACACCACAGACAGTAAACATGCTAGCATTATTAGCTTGCTAGTGGTAGTGCCAGCCCGGCTTCGCCCTTCCATGCTAGACGTAACCGTCCATCGAGAGTATCCCCAAAACCAATACTGCGTTAGTTCAATACTTTGACTTCCTTTCCCTGTCTGTGACTCTTATCGCCAAGCACATTAGTTCTTATTGAAGTCATGAATCCTTAAAAatcgattttttatttattatttattattattttttatttaaaggctaAATAATTTCACGGCAGGTGACtagtttttattaaatgttacTCAAACTGGAGTAAATAGTGtttttgttggggactattttcagctgggGTTTTGGGAGTATTTACAGCAGCTGGACGGTGCATGTGAGATTGACTGAAAAATGAACAACAGTGTCGGTGATTATTGTAAAGAAGGAACATGTCATCCAGTGCATCACTGTGGctcattaatgtgttttaatagtttttggacaataGGACAATGTGGTATGGAGGAATACGCTACTGTATATGAGGCTTTGAATACACATACAATTATTGTGAGTTGCATAGATTCAtggtttgttttggtcttcTTTGTGGGATTTGTcagtaagaaaaatatagaatattacCAGACTTATCCTTTTTAAGTAGTAATGACTAAGGCTGATATTTAATATCTCTACAGAATACATAAAGCACTATTATTAAAGTATAAATGAAATGGTTTCAGCATTTGTAACACCTTAATACTTTCACAATTGAAAAGTTGTTTTGCACTGAATAATTATTGATTggaagagcttttttttttcctctttggaCTGTTTTTGTGTGAGTAAAAATAATCTGTACTGGTTAATGTTTCTGCTGGACCCCGCTGTTCGAATAGATTTAAGACTGAATGTCACTTAAGTTATATTTCTGTTGCACAATTTGTATGTTTTCATGCAGATTTGGGAAACAGACCTTTTGAACAACTGAAAGCCTTGCCAAAAATGTGATAAGACTGGTTGATTGTACAATATGTATGTCTTCTCTGCAGAACTGATAAAGCTTTGGCTATAATTTAAAAAGACCACTGTATGTTAATTTGACATGATTGAAGTCCATGAAAATTTACAAACCAGGGTTAGTATATTGATGCATTTTTTCTATATTGcacttcattttcacttttcattATTGAAGTTTTGATATTAGTTACATAATGAAAGGTAATAACTTTACAAAAGTGCTGAATTGTTTATATAcgactcccccccccccaactaaATCCCTGACTGTTGACAAAGCAGAATAAAGTTATACTATTTTTGAAGCTTTTATGAAATGAATCTGTGTTAAGCCAAAATCTGAGTCCCATTATAATTTATTAAAGTGAAATTCTCTAATAA

Function

GO:

id name namespace
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG:

id description
ko04070 Phosphatidylinositol signaling system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66771 lncRNA downstream 21765 15071837 ~ 15073424 (-) True G49977
TU66660 lncRNA downstream 192330 14902089 ~ 14902859 (-) True G49882
TU66656 lncRNA downstream 205675 14888775 ~ 14889514 (-) True G49878
TU66654 lncRNA downstream 209803 14884146 ~ 14885386 (-) True G49876
TU66637 lncRNA downstream 229442 14862795 ~ 14865747 (-) True G49862
XR_005639238.1 lncRNA upstream 30752 15132652 ~ 15137753 (-) True LOC120559280
XR_005639236.1 lncRNA upstream 112070 15213970 ~ 15214624 (-) True LOC120559278
TU66790 lncRNA upstream 116161 15218061 ~ 15218563 (-) True G49991
TU66803 lncRNA upstream 200498 15302398 ~ 15302637 (-) True G50004
TU66804 lncRNA upstream 217506 15319406 ~ 15319845 (-) True G50005
XM_039800885.1 mRNA downstream 1151 15076829 ~ 15094038 (-) True col9a3
XM_039800887.1 mRNA downstream 3765 15076829 ~ 15091424 (-) False col9a3
XM_039801150.1 mRNA downstream 84194 15001961 ~ 15010995 (-) False zgc:113278
XM_039801149.1 mRNA downstream 84195 15001961 ~ 15010994 (-) True zgc:113278
XM_039801143.1 mRNA downstream 103310 14926288 ~ 14991879 (-) False LOC120559456
XM_039799839.1 mRNA upstream 565278 15667178 ~ 15681715 (-) False LOC120558694
XM_039799838.1 mRNA upstream 565278 15667178 ~ 15681714 (-) True LOC120558694
XM_039801284.1 mRNA upstream 613719 15715619 ~ 15724180 (-) True LOC120559538
XM_039801920.1 mRNA upstream 625300 15727200 ~ 15738542 (-) False cdh26.1
XM_039801921.1 mRNA upstream 625300 15727200 ~ 15738541 (-) False cdh26.1
TU66613 other downstream 241372 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 241372 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 560584 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 949967 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1841717 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 1179144 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2586215 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2737644 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3778465 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4597873 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile