RNA id: XM_039800941.1


Basic Information

Item Value
RNA id XM_039800941.1
length 1990
RNA type mRNA
GC content 0.46
exon number 10
gene id slmapb
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17130282 ~ 17141944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTCGGGAAGCCAAAACCTCTCACTCCAAATCCAGTCTGAGATAGAGGAAGTCATCGGGGAGCAGAAAAATAGTCGCggtcaacagtaacgttacaagGCTTCAGTCCAACAATAGCAATGAGGTATGGTACACAGTGATCAGTCATCACCTCGGTGtacccccccctctcctcactGCTTGGACTGGTCCATTTCGCATCTGAAAAAATCTGATAGTTGGAGAAGAGTTCTTCATGCCAGGGACTGCTGTAGCCTCAGCACACAGAGTACTGTAGCTCCTGGATCACCTAAGataAGCAAATGGATGAGAAAGAGCTGAGTGATCCCCTGAATAACGTATCGCTCATTAAAGATGATCTGACCAGGTCAAATATGGGGTCCTCTGGAGATTCAGAGAAAATGATCCAGCACTTGAATGATGAACTTCGAGAAGCCCAGGAGCTAGCTAATACTGagaaacacaaatgcatggAGCTACAAGGTATCCTgcaggaagagagaaaagaaaataagaaacaAGCTGATGAATCTGCAAAACAGATCAAACATCTTCAAGGCCAGCTGCGGCAGCTCCAAGATGAAGCGGGCATTCTCAGAGAGCAGATAGATGTCTCTTCCAGTTCACATGACGAGCTACTAAGTGCACGTGACGAGGTGAAGGCACTGAAACGTGCCCTGGAGGCAGCCACTGCTGAGCGGGACCATGACGTTGCCACTATCCAGACCAACCTGGCAGCTGTCTCGAAGGACCTGGAAAAATGGCGTCAGACTGCCAACAAATATGAGCGTGAGATTGACAATCTACAGCGTGACCTTCAACAACAGAGCAAGCAGTGGCAGAAAACTGCAGAAATACAAGCCAGTGAGCTGCAGTCAATGCAGGCGGAGTGTAATGGCCTTCAGAAGGAGTGTTCAGTCCTGCGAGCTGAAAAACAAGACACCCTAAATAAGCACCAGAAGGAAAGGAGTGGTCTGCAAAATGAGTGTGCTTCCCTCAAGGCTGAGAAGGAGGAACTCCTCAAGGCTCACCAGAAAGACAAGGGCAACCTGCAGAGTGACTGTGCAGCTCTGCGCTCTGAGAAAGAGGCAATGCTGCAGAGACAGCAGCAGCTGGAGAAGGACCTCGCCAGTTCGCGTGCCCAGAATGCTGAGCTGAGCAACAGCCTCAAAGCCCTAGAGGGATCCCAGCAGGAGTTGGAGAAGAGGCTGGCAGCCCTGCAGCTCCAGCACCAGCAGGATAGCACCAAGCTGCAAACCCAACTGGATGAAGCTGACAGCCACAGCAAGGCTCTGCAGAGAGAGTATGAGGAGGCTAAGACGGAACTATCAGACCTAAAGGACAAATATGAGAAGACTGAGCAGGAAAAGCAGTTGCTTACAGATGAGTTTGAGGAGTGCAAAGCCAACATGAAGGAATTACAGGAGAAAGGGACAAAGAAACCATGGGTGATCTGGGGGCCTGTGGCTGCTGTGGTTCTAACAGCTGTGACTGCTGCCGTGCTCTTCAGGACCTGAGGgcaacatgctcacacacacacacacacacacacacacacacacacacacacacacaggtgtgaaTCCATATTTGTCATCAGCTTCTTCTGTTCTGAAATTGAAAAACTTGCCCCCTTATCATATCTGCACTATTAATTAGGAGGGCTCCTACTTAACACTGTTTAATTTTTAAGATGGTCTATTTTAGATGACAGAATCGTTAATAAAAGAATGTCAGTTTTGTGTGCAAATGAATAACTTTGTTTGTATTATTACTTAAAGGAAACCTAGTTGGGTCATTTTGATTACTATCATGACTTATAGGAGTATCCATTAATGAATGTAAAGATATGCTGCACACTTAATTAGTAAAAAGAAATattataatgatgatgatgatattttaGATGGATCACCTGAAGTGTGAACTTAACTAAATGTAACACATCTCTGTAACTGTCAGAATAATAAATATTGTCACAGTAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67505 lncRNA downstream 15253 17108438 ~ 17115029 (-) False LOC120559328
TU67504 lncRNA downstream 15301 17106834 ~ 17114981 (-) True LOC120559328
TU67506 lncRNA downstream 15301 17108438 ~ 17114981 (-) False LOC120559328
TU67483 lncRNA downstream 50987 17074875 ~ 17079295 (-) False G50484
TU67596 lncRNA upstream 6263 17148206 ~ 17150051 (-) True G50548
TU67598 lncRNA upstream 9374 17151317 ~ 17151938 (-) True G50549
TU67603 lncRNA upstream 10257 17152200 ~ 17153427 (-) True G50553
TU67604 lncRNA upstream 10506 17152449 ~ 17153394 (-) False G50553
TU67605 lncRNA upstream 10506 17152449 ~ 17153427 (-) False G50553
XM_039800975.1 mRNA downstream 5995 17119666 ~ 17124287 (-) True abhd6b
XM_039800976.1 mRNA downstream 10720 17116150 ~ 17119562 (-) True kctd6b
XM_039800977.1 mRNA downstream 10721 17116150 ~ 17119561 (-) False kctd6b
XM_039800974.1 mRNA downstream 15235 17108439 ~ 17115047 (-) False LOC120559328
XM_039799624.1 mRNA downstream 25348 17098625 ~ 17104934 (-) False LOC120558578
XM_039801877.1 mRNA upstream 11545 17153488 ~ 17157550 (-) True si:ch73-233m11.2
XM_039801477.1 mRNA upstream 16861 17158804 ~ 17162048 (-) True LOC120559621
XM_039799276.1 mRNA upstream 67273 17209216 ~ 17240738 (-) False LOC120558336
XM_039799275.1 mRNA upstream 67273 17209216 ~ 17240495 (-) False LOC120558336
XM_039799279.1 mRNA upstream 67273 17209216 ~ 17238113 (-) False LOC120558336
TU67071 other downstream 846426 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2276465 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2276465 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2595677 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2985060 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 546172 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 697601 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1738422 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2557830 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2559387 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile