RNA id: XM_039800949.1


Basic Information

Item Value
RNA id XM_039800949.1
length 4713
RNA type mRNA
GC content 0.45
exon number 13
gene id spats2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11784803 ~ 11806444 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTGGCAACCCCGAAGGAGGAAAATATGCCCACAGCAGACTAGAGAGTACTTGCCATTAAAGACGGCTGGCGGTGGAAGTATCGGTGACCCGTTTCCAGAATCTACTGTTCAGTTTTCTTGCCAACACAAaTTTGGATCAACTTGGTAGAAAAACGAGAGGAAACCCCCAAATCTTTTCCTAAATGGTGGAGGACTGATCTCAACCTCATTCGTCCAACCCTCCTGCCAGTTGTGAGCCTTGTTGGCATCTTCTCGAACAAGAAAAACTGTGGGAAAGTGGCCACTCTTGGAGCCCTTATTTGACCACCATCTTAAACACATTTGAAGTGTTAATACTGTCTTGAGGAAGTACGCAACCAAACATTTCCTGGATACTTCTGTGTGACaacatggcaaaaaaaaacagcccaaAGGATACGTCAGGGGTGGTGTTTGACACACGCTCAAAAATGGCCATGTCCCAGGGAGGAACAGCTGATAGGATGAAAGAGAAGATCAGTGCCGTCAGGGCAGTTGTGCCCAACAAAAGTAACAACGAGATTGTGCTAGTGTTGCAGCATTTCGAAAACTGTGTTGACAAAGCCGTTCAAGCTTTCTTAGAAGGCAGTGCAGTTGAGATCCTGAAGGAGTGGAATGTCACCGGCAAAAAGAAGcccaagaagaaaaagaagcccAAGCCTCAGCCAGAGGCTTCAGCCGAGCCTGCTCCACCTGAGGCCACGTCGCCTGAGGAGGGCAAGGATGAGGTCAACGGCTTTCATGCCAACGGATCAGTAATGGACGTAGAGTCACTTGATTCTCTGAGTGAACAGCTGGACTCTGCCTCCCTGGATGCAGCCGAGCTGGACTCTGAACCTGTTACATCCGAAACCACCGGTGCAGAAGCAGAAAGTCAAGGTAGTGTTCCAAGTCCCCCCTTACAGCAAGGAGGGAGGAATCACCAGGGTCCCAGAGGCAACAAGAACCGACACAGGCCAGGCTCCAATTCACATCCACTCACTTCCTCATTTCCACCCAACACTGATGAACACGGATCATCAGGAGTCAAGAAGATGGCTCCCAACATTGACCGCTCTGTGAAGGACCTGCAGAGATGCACCGCCTCACTGACTCGCTACAGGATAGTGGTCAAGGAGGAGATGGACTCCTCAATCAAGAGGATGAAGCAGACGTTCGCTGAGCTCCAGAGCTCtttaATGGACCGAGAAGTGACTCTACTGGGAGAGATGGACAAAGTGAAAGCAGAGGCCATGGGGATTTTGGACTCCCGGcagaagagagcggaggagctcCGACGGCTGACCGACCAGTCAGCATCCATGTCTGAGGAGCAGTTGACTGAACTGCGGGCGGACATCAAGCACTTTGTGAGTGAGCGTAAATATGACGAGGACCTTGGGAAAGCTGTAAGATTTACATTTGATCTTGAACCGCTGAAGGCGAGCATCTTAGGGTTTGGATCAGtttACCATCCGCATACTGGCTACTCCCACCGGTCCCGCTGTAGCTCCACGTCCTCTTCGGTCGCCAGCCCGAGCCAGCTGGAgactcctcctcccccccagaCTCAAAGCACCCCCAATGAACACCGCCCTCCACCAAACAAACAGATTTTCCAAGGCAACAGGCGTACTTTCCAGGGACAAGGGTATCATTCGGGTGCTCAGAGGTATAACGGCGCTTCCTACCATGACCGGAACGCCGCTCGTGCTAACCACCGCTACCAGAGTGACAGTGGCTCTTCTGGTCCTTCGCAGCACTCACACAGCTCCAGAGGTCCCCACCATTTCTCCACGTCCTCCTACAACCCAGACCGACCCTCTCATAACGGGCTGCCCCAAAGGCCTCCGCGGACGCAATGCCCCTGACATTGGAAACCCCGTGCTTAATCAAACCCATCTACTAACCCTTGCACTCGTCTCCCCATAGCCTCCCCCTTGCCTTCTACACTCTTCCCCTCTACTAACTCCTTTCAATGAAGAATAGAATACAAGTTTACATATTTCTGTCAGTCGAGCTGTAGTGCCACCTCTCTACATCAAACTTGAAACGCTTTCACTGTCCTGTAATCGCTCATCCTTTTTGCATTTCTTCCATCCTGGTTAAGGTAACCGCTTCTATCTTTAGGCTCCCTTTGAGCGATCTCGTTGCTATGCTATTGCCAGTCTCTGTTATTTTCTACATTTAAGCTGTCTGCCAGAGACCGCCATGATTACCTGCAACATTTTGTGCACTATTGAAGTTGAGCTCTTAGTTCTATTTTTACGGTGGCTTATGTCAGCTCTCTGATTTGCACGTCagatctattttttttaaatatttttttctcgtCTCTCAGAACCATTTCAATGCCTTCACCGTGGAAAGCGTAGTATATGTGCTAGTGCTGCAGTTCTAGCATTTACAGAGATTTTTGTCATCATGAGAGTAGACCTGCAATCAACACTACAGACTATCATTAATCtttacaatgtaaaaaaaaaaaaaaaaatgaagcatATCAAACTGTAATCCAGAGCTTTTCGTATGGCTGCTACAAACCATAGAGAACTTGTTAACACTAGGACTTAGATGTGTTTGAGAGTAACTCTGTGAACAGAGAGGTTGCcgccttaaaggaatagttcgacatttGAGAAATGGCTCATTCCCTAACTTTCCGAGAGTTGGATACGAAGATGGATACCGCCCTCGTGTCTGTACGATAAATATGAAGCTGTCaacagcagccggttagcttagcacaaagactggaagcaggtggAAACAGCTTTGTTACCTGACCTAATGTCACAAAATCGGCCTTCCAGCACCTAAAGTTCAATAATCAACACTttctattttgtttattttgtacaaAAACTGAAGTGTAAAGACACCAAGTTGTGGTTTTATGGGGGGCGCGGGGGTTATGTGCCAGGCAGGTGGCGCAAAGCCAGCGGTTtcccttgtttccagtctttatgctaagctaagctaatcagccgctggctgtagcttcatatttaccgtacagacGTGACCgcggtatcaatcttctcatctaattcgCTGCAAGAAAACAAAGATGCACGTTACTCAAAATGTGGCGCTTTTCCTTTAAATATTGCCTAAGACAGTGATGCGTCGCGCTCCCACTGGCCAACGGTTATCGTGTGTGCTGTTGTTGGCTTGCTGTCCGTTATTTTGTAACAAAGAGAGGGCTCATTACCGTTTTGTAGAATACTGTTAAATAATGTCAAAACTCACAACAAAGGAAACTGTCTACATGCTGTTGTATATTTAGTCCTTTACAATTCTTCAAATGGATTTTCTTCCACACACAGTTTCTTCTTTGTGTTCTTGCGTTGTTATATGCAGATGGACGGCATATTAATGACATGCTTGCCTTTAGTCCCAGAGAGACTTCACATTTGCCTTTCTAGAGACATAGATGTCTGCATCATGATGGCTTCCTAAACAGATGGTACTTGTAGAGGAGATGATTTATAATTATATGTGTAAGAATAAgatcttttcttccttttttttttatattctcaaTTTATCCCATCCATGAACGTAAAACTGATCAAACCGATGAATGAATTAGAAGGTTGTATTGagctaagaattttttttttttttggtcttctATGGCTGCCAAGTAGACGCTTTAAGGCTGTTTTTGGGGTTATGTCTCATCGTACTGTCCACAGCTTCTAACAGAAAGCTGGTGCGTACCTCGGTGCTGATGATATGAAGCGGCCTGTCTTCTGGCAGTGGGCTTTAATTTAAGGGACCGGGACCCCCGGTGATGCCTCTTCTCTTCTTGTAGTTATGTACATACAGCATGTGAAGCGCCAAGGCTGTAATGTAACTGACTGGTTGTTACATAATTGCTGCATTTTCTCCATAATGTGTCGTCTTCCTTTTGAGCAgacttctccccccccccccattgttTGTTTCCTTGTGGGTTTTCATATGATGGGGagatttttcttcttatttaaGAGATTCAAAACCCCCAGTGATTATTAGTTAATATTGTGGAGAGAAGAGCGTTAACTTGTTTGGTGAATATGTACTAGAACGACACGTTTTGACTGAAATCGTCATCGCCCGTAGTTGCAGATGGTTTGATTTACTCCAGTATATGGAGATGCTGGATTTGTTCAATCATGACTCAAAGAGAGTAGATTGTGTCTGCCTCACTTTAaccactttttttgttttacattccAAACTGTAGGAATATTAGGTTATCGCCAAAGAAAtaattttgtccttttttttttttgttttttttttttgtttgctcgGCCTGTAAAGAATTCCAAAGGGGATAAATCCAACACTtcacctttttttcttcttcctatactacttttattttctgattccttactgtatatacatatatgtagcTATATAATTTTGTGCTCACATGGGGCATTTTGTATGTGATATTCATATTAGGCATAAATAATggaggttagacatttagttaaTTCATTCTTCCAGTAGACCTTGTGTCCTCCTCAAGACAACCTTTCTGAGACAACTGTTTACTCAAGTGCCTTTTCTTGTCTCCCACTGATTCATTGACATCCCCTCCACCAGAATATGGACCAAAGACATCGACCGTCCCCAAcaccccctctctttctccccactCACTGAATTGCACACTTTTTATTTACTATGAATAAACAGTTTGCaatactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65307 lncRNA downstream 169094 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 178189 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 184295 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 205815 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 211814 11564071 ~ 11572989 (-) True G48903
TU65449 lncRNA upstream 79521 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 152935 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 196823 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 313214 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 313308 12119752 ~ 12121550 (-) False G49084
XM_039801332.1 mRNA downstream 34194 11746307 ~ 11750609 (-) False ormdl2
XM_039801331.1 mRNA downstream 34244 11747712 ~ 11750559 (-) False ormdl2
XM_039801330.1 mRNA downstream 35118 11746307 ~ 11749685 (-) True ormdl2
XM_039801218.1 mRNA downstream 53722 11716619 ~ 11731081 (-) True cd63
XM_039799388.1 mRNA downstream 84869 11696956 ~ 11699934 (-) True zgc:56699
XM_039800928.1 mRNA upstream 11706 11818150 ~ 11825217 (-) True LOC120559301
XM_039799420.1 mRNA upstream 29219 11835663 ~ 11841573 (-) True LOC120558426
XM_039801842.1 mRNA upstream 38267 11844711 ~ 11848087 (-) True LOC120559814
XM_039801624.1 mRNA upstream 48606 11855050 ~ 11863694 (-) True slc13a3
XM_039799397.1 mRNA upstream 59263 11865707 ~ 11871461 (-) True LOC120558412
TU65038 other downstream 1129985 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1758978 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2060669 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2086696 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3678608 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 82497 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 320442 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 320442 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 343350 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 414293 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile