RNA id: XM_039800955.1


Basic Information

Item Value
RNA id XM_039800955.1
length 2248
RNA type mRNA
GC content 0.45
exon number 10
gene id capza1b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19221020 ~ 19225831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCGAATGACAACCACCGCACTGCTTCTGTCAGTCAGCTGGGGTAGGTGGGGTCACAAAGAGCCAAGATGGCTGACTTTGAGGAGCCGCTGTCAGATGAAGAGAAGGTCCGCATAGCGGCCAACTTTGTGACTCATGCACCCCCGGGAGAGTTCAATGAGGTCTTCAATGATGTGCGACTTCTTCTTAACAATGACAACCTCCTCAGGGAGGGGGCATCACACTCCTTTGCCCAGTACAACATGGATCAGTTTACTCCTGCCAAACTAGAGGGCTACGAGGAGCCGGTCCTGATCACAGAGCATGGTGACTTGGGTCAGGGACGTTTCCTGGACCCCCGCAACCGTTTGGCGTTCCGCTTCGACCACCTAAGAAAAGAGGTGAGCGACGTGCAGCCATATGAAGGAGAGACGGCCCTGAAAAGCTGGAGAGATGCCTGTGATACTTCCCTTAGTGCCTACGTCAAAGAGCACTACCCTACTGGAGTCTGCACGGTATATGGTAAAACAGTTGATGGACAGCAAACGATCATAGCCTGCATTGAGGGACATCAGTTTCAACCCAAAAACTTCTGGAATGGTCGCTGTAGGTCAGAGTGGAAGCTAACCATTGGTCAGTCCACTGCTCAGGTGGTAGGAGTGTTGAAAATCCAGGTGCATTATTATGAAGATGGGAACGTGCAGCTGGTTAGCCATAAGGAGGTAGAGGAATCAATACCAGTGACTAATGAAAGCCAGACAGCCAAGGAATTTGTTGACATCATAGAGAATGCGGAAAATGACTACCAGACTGCAATCAGTGAGAACTACCAGACCATGTCTGACACCACCTTTAAGGCCCTGCGTCGCCAGCTGCCTGTCACACGCACTAAGATCGACTGGAATAAGATCCTGAGTTACAAAATTGGCAAGGAGATGCAGAATGCCTAGTCGAAGGTCAGGGACTTACCAGGGAGATGCACACTCCACTGGGCCCACAACCCGCCTATACATGCGCAAGGACTAACCAAAGCAAAACTATACGGTGTGGGGCAAggaataaatggaaaaaaacaaaaaaaaagtataactGAAGATTTGCAGACTATTAGGCACAGATTTCCATCTGCTGTAGGGAAGCTGTGGTTATGGAGATAATGGTGGTTGGAGAAAGTGGTTACTTCTGGGTGTGTGTTGTGAAATAGTTGTGTTGGGTCAGCGTGCAGGGCTGTGCTCAGGACTGCTACATTAAAGAAGTTAATCTCCCTTTGGCCGTATGAGGAATCACAGACCTCCCGAGATTCAGGTGTCAAAAGTTACAATGTTTTACCTTAGTCAAACTGATGGAGAACTTTGATCATGTCACAGTAGAGATCTCAGCACATGGAAAGAACCAACACCGCACAAGGCAGCTGATGAGAGAAATGAAGCACACCATCACTTATTATGGTTTGATTTTGGACAGGAAAATATGAATTTTgtgaaagtttttttgttttttggttgtcATGTATGTTGGAATCAGACATCAACTGCATCAGTAAAATCTGGCAACATAGAAATAACTACCTGCTATTAACATTTAGGAGTGGCATGGTCCTCAGCATAGCTCTGTTCCTGCACTGTTGACCTGTATGTTTGTCGGTGTCTGTCAGGGCTGAGGGAGTGTTAACTTGTTTTCTGCTGTGCTCCACTATGTATGTCTCCATCCATGCAAGCAATGATGACTGAATTAAGATAAATCAACTTCTAGGCTGTTGCATCAATAATGCATTCTCTGTTCTGTTACTTTGGCAACACCAGCTTTATTGCTGTACAGCTTTTCCTTTGTGAAAGGAAAACATACTCATATTAACCAAGATTTATTTGCCAAAATCTCTTTCCTATGGTAAAGAACTCCATCATCCCACCCATGTATGCAAATTTCTATTTTAATACGCTGGTTTGTGTTGGAGTCTTAGGATATTGCACTCAACTATTCTTAACTGTAACAAACTGTGTATTGGTCAATGCCAAGTGAACGCAAAGCAGTTGTCTTGTACTGTAAAGCAagattatatactatatactatacatgACTTCTGTAAGGCCATAtcatactgtgtgtgttacATAATGTCTAAGTAGGCTGACTCTGGATCAGTTACTTGTTAGCTATACTATGTGCTGTATTCAACCCTCACACTATGCTACAACTGTGTGCCGATCAGTTATAAAGTTCAAGACTGTACTGCCCCATTCTGTTGTACAAATAAATGGACTGAACATCT

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68282 lncRNA downstream 270584 18948833 ~ 18950436 (-) False kcnd3
TU68268 lncRNA downstream 292185 18922863 ~ 18928835 (-) True G51088
TU68243 lncRNA downstream 462519 18758042 ~ 18758501 (-) True G51069
TU68241 lncRNA downstream 480677 18738483 ~ 18740343 (-) True G51068
TU68237 lncRNA downstream 507807 18712675 ~ 18713213 (-) True G51064
TU68313 lncRNA upstream 1490 19227321 ~ 19227905 (-) True G51122
TU68349 lncRNA upstream 101821 19327652 ~ 19415195 (-) True G51147
TU68459 lncRNA upstream 230821 19456652 ~ 19459405 (-) True G51228
TU68468 lncRNA upstream 369763 19595594 ~ 19597508 (-) True G51236
TU68493 lncRNA upstream 573374 19799205 ~ 19805539 (-) True LOC120558911
XM_039800735.1 mRNA downstream 143239 18945968 ~ 19077781 (-) False kcnd3
XM_039800736.1 mRNA downstream 143239 18945968 ~ 19077781 (-) False kcnd3
XM_039800733.1 mRNA downstream 143239 18945968 ~ 19077781 (-) True kcnd3
XM_039800734.1 mRNA downstream 143460 18945968 ~ 19077560 (-) False kcnd3
XM_039800430.1 mRNA downstream 287526 18930975 ~ 18933494 (-) True parapinopsina
XM_039800316.1 mRNA upstream 212797 19438628 ~ 19575574 (-) True cacna2d3a
XM_039801235.1 mRNA upstream 362453 19588284 ~ 19602069 (-) True atp6ap1lb
XM_039801619.1 mRNA upstream 378925 19604756 ~ 19614597 (-) True b4galt3
XM_039801413.1 mRNA upstream 389815 19615646 ~ 19632023 (-) True bgnb
XM_039800432.1 mRNA upstream 411183 19637014 ~ 19649377 (-) True si:dkey-32e6.6
TU68271 other downstream 334267 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1334687 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1531260 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2937164 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4367203 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 473942 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 475499 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 480848 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1094936 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1646877 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile