RNA id: XM_039800967.1


Basic Information

Item Value
RNA id XM_039800967.1
length 2307
RNA type mRNA
GC content 0.46
exon number 2
gene id fitm2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8252178 ~ 8255966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGATGATGGCGGACCTGTCAAGCAGTCGTATCTAAGTTCATGCTCAACTGCCCCGAATTTTACACGAAAACTTAAATTTCAAgtcaaactaattaaaataggaaagcgattttatttttttttaaataagcgaAAGGACCTCCTGAAAGTAGCCTACAAGTTGGAACCTTAATGTACTTTAAACCGAACATGCCGAACCCGGTGCTGAGCGGAAGGACTGGAGCTAAGATAGGCACTTCCTCAATCCAAGCAAACAGATGGGAGAGCGACTACTCGCAGATGGATGTTCCAACCGAGAGCCCCCCTCCTGCTACTTCAACGAAAACTCGGGCGCCCCCTTCAAAGGAAACGCAAATGTGCAGCCCAGCTCGTCCGGTCAGTGGTGTCAACATGGCGGCGGTAGATGTCATTGTGGATAACTTGGTGACACTCTGGAGGATACCGGCTGTCCGACAAAACTTCCCCTTGATATTTGTACTGATTTCGGTCGTGGGGTCGCTTCTGAAAGAGCTGGACGTCGTCCCGCAGACATATTTCAGCAGCAGCGGAAATGCCCTGAATGTGTATTTTGTCAAAGTGTCCTGGGGCTGGACATTGCTACTGCTgacccccttcctcctcctgtcCAACTCCGCCTTCAACAGGAGCGTGTCCTTCCTCTCCCGCCGACTGCTGTCTCTGCTGGTGGCGACGGCCGTCTGGTACGCCTGCACCCAGACCTTCTTCTTCATCGAGGAGGTGACCGGTTCGTGTTACGAAACCGGCACCAAGGAGGTTCTCATCAAGGAGCTGGCGACCAAAGCCAGCTGCAGGCGGGCCGGCTTCAAGTGGCACGGCCACGACATCTCGGGGCACTCCTTCATCCTGGCCTACTCGGCTCTCTTCATCGCGGAGGAAACGTCGCCGATGGCCTCCCTAAGGACCGCCGGTCTGTCTGCGCTGCCCAGGATGGTCCTCAACCTGCTGTACGTGGCCTTGAATCTGATCGTGATCGTTTGGGTGTGGATGTTTGCCTGCACCTCTGTTTACTTCCATCACACGTCTCACAAGTTGCTAGGGACCTTGTGCGGACTGGCGGCGTGGTATCTGACGTATCGGGTTTGGTATGTCAAACCTTTATCACCAGGACTCCCCCCTCAGCGCCACCCAAAAGAACAGAAACAAAACGCCTAAGCTGCAGTCATACGTTCCAGTACAACATTGTCACTAATGTTGCAGCCACTCTGGAAAACAACACACTACAGTTGTTGCTATCCGTCTCCAGGTCCAAGCTGGCCGTgctaatttaagctattttaaGTTATTCCCTCCTCAAAAGAAAGGTTGATTTGTACAGGGATGGTCGTTGGCAGCTGCTGTTCCCAAAATGACTCTCAGTAATCCGAGCTAAAAGCAAGACGCTGCTCTGCTGCCCAGCTTCTGCCTCTCACCTCCAGCTTCTGAGGCTCGCTTGCTTACACCAAGCGTTTGTCCCCCTAGTTTGTtgccttaaaatgtttttatttgtggatGATTCATCAGAGATTTTTAGATGTCTGAATGGGAACACTTGAGAATGTTTACAGCTccagttgtatttttttttttttttttttgcagacaaATGTAAAGAAGATATACATTGTTTTTATAGGAAACCACCATCAGAACAAAGTCAGATCAGACACCGTTACTACAGTGGGCCTAAATGATTTACTGATTGAAATGGTTTGGGCTCACTGCGGCTGTGGGTCAACACTGTAAAAGTTTGCTCCTATGTATGTAGAGCTTGAATAGCAGATATGACCATTTTAATGTATCATCATGCATAGACTTAAGTTATTTGCAAAGTATTattaaaatgctttaaaagGTTTAAGGCTGGAAATATCTGCGATTGTTTTAAATTtgctaaaaaacaaaatatgcatCCCAATTTCCTAATGCACAAGGTGACATCTTTTTAAATGCTGTGTTTTTGTCCTGGAAATAGTtgaaaacccaaatatattcaattcaCAATCACGTAGGACCAAAGGCAAGCGACACATCCTCACAACTGTAAAGGTGGAACCAGAGAGGTGGACTTTTGGGCTTGGAAAAATAACCCAACTCAAAAGCAGTTGCAGATTAGTTTTCTGTTGATGGACTAATCCATTGgtcaactaattgtttcagttgtggttttatttattgtcaACAACACTATGAAAAGACAAAGTAACCAACCAATAAGTGTtgccaaagcctgatatattaCGTTACTCTGTGCCGTAGAGCTCCACtcttgtccaaaaactattaaaaaaaatacatcaatgATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64020 lncRNA downstream 73078 8178655 ~ 8179100 (-) True G47935
TU64064 lncRNA downstream 177943 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA downstream 201757 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA downstream 201757 8047822 ~ 8050421 (-) False G47972
TU64046 lncRNA downstream 257446 7991869 ~ 7994732 (-) True G47956
XR_005639295.1 lncRNA upstream 25981 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA upstream 25981 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA upstream 25981 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA upstream 25981 8281947 ~ 8296462 (-) False LOC120559498
XR_005639294.1 lncRNA upstream 25981 8281947 ~ 8296462 (-) False LOC120559498
XM_039800409.1 mRNA downstream 34297 8188068 ~ 8217881 (-) True jph2
XM_039800413.1 mRNA downstream 77186 8172190 ~ 8174992 (-) True LOC120558991
XM_039800410.1 mRNA downstream 82452 8164469 ~ 8169726 (-) False LOC120558989
XM_039800411.1 mRNA downstream 82470 8164469 ~ 8169708 (-) True LOC120558989
XM_039800406.1 mRNA downstream 121441 8123547 ~ 8130737 (-) True LOC120558984
XM_039801740.1 mRNA upstream 125813 8381779 ~ 8409734 (-) True ada
XM_039800902.1 mRNA upstream 316713 8572679 ~ 8577776 (-) True LOC120559283
XM_039800908.1 mRNA upstream 377089 8633055 ~ 8643551 (-) True gdi1
XM_039800914.1 mRNA upstream 406510 8662476 ~ 8674082 (-) False taf8
XM_039800915.1 mRNA upstream 406510 8662476 ~ 8674082 (-) True taf8
TU64005 other downstream 64627 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 145983 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 365328 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 753376 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 765118 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 1434564 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1452365 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1769028 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2386753 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3632975 11888941 ~ 11891046 (-) False srxn1

Expression Profile