RNA id: XM_039800978.1


Basic Information

Item Value
RNA id XM_039800978.1
length 3313
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120559331
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13437589 ~ 13443946 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccacaccACACCAACCCCCCAGCCCAGCTCAACCAATGAGATTAAAGGACTGCACAAGAGAAGGGTTAAATTAAGTATCAAAACACACAGAAGAAATAGTGCTTCTGAAGGTTTGTCAGAAGGTGTGTActggatttttttaaaacagacgTGGTTGAAGAGGATTTGTGAATACAGAAGAACTAGCTGTTATGTTTCAGATTCCTGTTGCAAATGCTGTTAGGACCTAAATCTATGCAAGTTTAGGGTGACATTCGGACTTTGATTAATTGCTGCTCACTACATCAGGTCAAACATGGGTCGCTACCTCTGCACCAACTTGTGTTCAAGTTCTGTGAACAAGACTTTGAGATCATACTGCAAAATTAGGTACCTAATGAGCCTTCTCAGAAAGCACCCTCGTCTGGCTAAAGCACCACTTGGCCCGGACCTCCACAGATATTCACTGCTGTCATCTCCTCATCCGTCCAGATTGATGAGAAAAggaacttttaaaaatgtaaactacAATGATACAGGCTCTACCTCTAACCACTTCCTCAGAGATTTTACCAAAGAACTGAAAAGTCTCCAGCCGGTGCGTTTTTACTCGTCCTCCAATAAGAATACATTCAAACCGGAAGCTCCAATTGGGATCTTTGAGGAGCCTCAGAACAGTTTTCTTTTGAGGTCGCTGGGAGGACGTCTTGGTGAATCATTTAATAGATTGTCCAGACATATTaacatttatttcaagagaatGGATGTTGTACATCTAGCTGAAAATGCCAGCCTTGTTGTCACAACTCCAGAATATCTTGGCAGATCACAAAGGCGTAGTCAAAGTCAACGGGCAGCCAAAGAGAGATATATATCCAAGGGCAAAGACACAACGCAGACCTTGAAAACCAAAGACAAACAGGAGAGCTCAGGAACAAGTCCTTCAAGACAGAACGACTCTGGACTCCAActatttcacatcagcaatttGGCGACAACATTTGGTGAGAGCTACAGTTACGTGGCTAGTCACATTAACTCAGTCTTCTCTCGTGGTtttgcaaaagttaaaatgcAGGAAGATTTGGAAACCATATCTTCCAGCAGAGGGACAAACAAGAGGCTAAAGAGGAGACACATGCAAAACACTTACATCATAACATCTAAAGAAGCGGAAATGTCTCAAGTGAAATTGGGTGCTGATCAGACAACAGTGGAACCTAACAATATCTacagcagctgggaggagggCTACCGCCACTTTGCAAGGCACATCAATAAATACTTTGGTGCCAAGGTTACAGAAGAAGTTGACCAAGATCAGAATAGGAGAGAACAATTTCCTGTGGAAAAGAATAGCACTTacaaaaaacacttttcagCAAAGTCCACCTCACAAACTCAAAGTGCCATGTCTCAACTGAAGCAAGACAAACCTATCATCCATGAAAGTGGAGGCCTTTTCCACAGCAGCCGTAAAACCACTAACTTTGGGGAGAACTTCTTCCAAATGGCCGGTCACATCAATCAATATTTCAAGGGTCAGAGTGGATTGGATAAGGACATTGATAGAATTCTCCTAACGGAGATGGACCCTAAATCTGCTACCTCTGAGAGACTGAAGACTGTATCCTTTATGGACTGCCTTCGCCACCCCACAAGCGCCATCCCTGATTTGCTGGGTGCTTATCTAAAACTGGGACCCTTGTCCCAGACCGGTAAGCTCAAACCGGCTATGACTTCCCCAGAGGCAATGCTGAATAGAAAGGTTGTCTTGAGTCAGAGGCAGGCAGAGGAAATGACACAAGGGTTGATTGGCACTCTGTCACAGTCTTCCTCTCCAGAAGCTCTGACTGCCTGCGTGGAGGCACTCAATGAACACCTTATCCATTACCCATCATGCAAAGCTTTAATGTGGCAGGAGAAAACCGCGGTCACATTGTTAAGAAAGCGAAGAACCTGCAGAGATAACCAGGTGCTTCAGAGCGCCTTAAGAGAAAGCTTTGCTTTAATTGGCTATGTGGATCCAGTCAAAGGCCGTGGCATTAGAGTGCTCTCAATTGATGGTGGTGGCACAAGAGGTGTGGTGCCTTTGCAGGTATTAAAGCTACTGGAAGCTGAGACAGGCAAGAAAATCCACCAGCTGTTTGACTACATATGTGGAGTGAGCACAGGTGCCGTCCTAGCTTACATGCTGGGCCTGGCCCATTTTTCTCTGGAAGAGTGTGCTGACATGTATCGTCGTTTTGGCTCCGAAGTGTTTCGGCAGAACCCGCTGGTTGGTACCGTAAAGATGGGCTGGAGTCACTCTTACTATAGCACTGACACCTGGGAGACAATACTACGAGAAAAGCTGGGAAATAGAGTACTTATCAAAACAGCCAGGGATGAGTTGACTCCTAAGGTTTCAGCAGTCAGCGCAGTGGTAAACTGGGGTACCACTCCAAAAGCCTTTGTCTTCCGCAACTACAACCACAAACCAGGCTCTCTCAGCCGCTACGCCGGAGGCTCAGTCTGCCAGATGTGGCAGGCAGTGCGAGCATCATCAGCTGCCCCAGGATACTTCCAGGAGTTCCCCTTACAAAGTGACATTCACCAGGATGGAGGAATTATCCTAAACAATCCCTGTGCCTTGGCTGTCCATGAGAGCCGTCTATTGTGGCCCAACCAGCCCTTCCAGTGTGTGCTGTCCCTTGGCACCGGTCGCTATGACAATGCAAAGAGGGGACCTGCCACCTCCACCAGCCTGAGGGCCAAAATCAGCACCCTGATCAACAGCGCTACAGACACTGAAGGGGTCCACACCCTTTTGGATGATCTGTTGCCTCCAGACGTGTACTTCCGCTTCAACCCCATGTTGAGTGCTGTGGTGTCCCTGGATGAGAGCCGTCCACGGGCCATGGACCAGCTGCAGAGAGACACCCAGAACTACCTGGAGAGAAACCGGCCCAAACTGGCCAGGCTCTGTTTGGTGCTTGGGGCGGAGCGCTCAGCTGCAAGCAGAACTAAGGACTGGATGAGTGAGAGGGCCTGGGAGATGAAGCAGAGATGGGTGTGAGTAGGTACAGTAGGTTGCATGTCTACATGCAGACGCACACCCCGCGCACGGACACCTATACAGACCATGGactaaataacagaaacaccttAAAGTACAACAACCACCCCGATGTACTGAAGCAATCAGGTTTGTTGTTGAGACCTTGCATGTGTCACTTCAACTCAGTGGTCATTTTTAGCTGTGGCTCTatcagtgttggtcatcttactttaaaaagtaattatttacagttacaaattacttctcccaaatagtaattgagttagtaactc

Function

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66135 lncRNA downstream 4494 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 30146 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 58726 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 69216 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 79784 13355117 ~ 13357805 (-) True LOC120558463
TU66283 lncRNA upstream 211585 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 211585 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 303473 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 595789 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 675035 14118981 ~ 14125759 (-) True smim29
XM_039799473.1 mRNA downstream 2083 13414941 ~ 13435506 (-) False nfascb
XM_039799470.1 mRNA downstream 2083 13414941 ~ 13435506 (-) False nfascb
XM_039799474.1 mRNA downstream 2084 13414941 ~ 13435505 (-) False nfascb
XM_039799471.1 mRNA downstream 2212 13414941 ~ 13435377 (-) False nfascb
XM_039799472.1 mRNA downstream 5866 13414941 ~ 13431723 (-) True nfascb
XM_039800979.1 mRNA upstream 1297 13445243 ~ 13447764 (-) True LOC120559332
XM_039801896.1 mRNA upstream 66705 13510651 ~ 13519559 (-) True LOC120559852
XM_039801895.1 mRNA upstream 69911 13513857 ~ 13519559 (-) False LOC120559852
XM_039800755.1 mRNA upstream 76538 13520484 ~ 13527197 (-) False LOC120559206
XM_039800756.1 mRNA upstream 76538 13520484 ~ 13527197 (-) True LOC120559206
TU66001 other downstream 184117 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 998864 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1045918 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1214587 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1268380 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 696434 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1088178 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1401392 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1401392 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2837098 16281044 ~ 16283856 (-) True G50217

Expression Profile