RNA id: XM_039801039.1


Basic Information

Item Value
RNA id XM_039801039.1
length 715
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120559372
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40705318 ~ 40710077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccgaaccaaggttcatgtttttgttacattgtatacatttgatccgTGTCAAATGTGACTTTTGTTCACGTTATTGGCAATATGACATGGTCCGAGGCCCAGAGCTACTGCAGAGAACAGCACACAGACCTGGCCAGTGTGAGAAACCTGGCAGAAAACAAGAAGgtacaggaggtgatacctcgCCATGGAGTCGTCTGGATCGGCCTCTTCAGAGACTCCTGGACATGGTCGGATGGAAGTAACTCCTCATTCAGGTTCTGGAAGAAAGGGCAACCTGATAACAACAATGGGAACGAGACTTGTGTGGCTGCAGActtcagccaatcaggagcCTGGGAGGACTGGCCCTGTGACATGGAGAGAGCGTTCATTTGCTACGGTccagTGGTGTCTACTTCAAAGAAAGTGATGAAAGTGAAGTTTGAGAACAAGAAGAATCTGGATCTGAATGACCCTGCTGTGATGGAGGCCATGTTGAAGCAGCTGAAACAGAAGCTGAGGGCCCAGGGGCTGGACGACAACATCAAGCTGAGCTGGAGGAAGCAGGCCGATGGAAAAGTCTTCCACAAGGAAGACAAGAAGACcaacaagaggaggaggaagagggaggagctgtaatgttgagttgctgcgtctgttttcatcagagaaaaGTCTGGTTCTTTGCAAGCAGAAATACTAAatatattcacagcttctagCTTCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76351 lncRNA upstream 45555 40659503 ~ 40659763 (+) True G56891
TU76345 lncRNA upstream 93015 40608564 ~ 40612303 (+) False G56886
TU76346 lncRNA upstream 93015 40610200 ~ 40612303 (+) True G56886
TU76339 lncRNA upstream 142682 40560491 ~ 40562636 (+) False G56881
TU76340 lncRNA upstream 144383 40542375 ~ 40560935 (+) True G56881
TU76360 lncRNA downstream 33887 40743964 ~ 40774542 (+) False G56896
XR_005639320.1 lncRNA downstream 58202 40768279 ~ 40769442 (+) True LOC120559572
TU76375 lncRNA downstream 58223 40768300 ~ 40769240 (+) False LOC120559572
TU76376 lncRNA downstream 59979 40770056 ~ 40770457 (+) True G56905
TU76362 lncRNA downstream 64027 40774104 ~ 40775191 (+) True G56896
XM_039801037.1 mRNA upstream 13696 40673031 ~ 40691622 (+) True LOC120559371
XM_039800489.1 mRNA upstream 190295 40496849 ~ 40515023 (+) True LOC120559068
XM_039801429.1 mRNA upstream 235754 40469283 ~ 40469564 (+) True LOC120559596
XM_039801778.1 mRNA upstream 240392 40464551 ~ 40464926 (+) True LOC120559775
XM_039801763.1 mRNA upstream 253904 40430115 ~ 40451414 (+) True hm13
XM_039800491.1 mRNA downstream 12575 40722652 ~ 40725794 (+) True LOC120559071
XM_039799518.1 mRNA downstream 25840 40735917 ~ 40744474 (+) True LOC120558500
XM_039799615.1 mRNA downstream 178333 40888410 ~ 40889879 (+) True LOC120558575
XM_039799345.1 mRNA downstream 346074 41056151 ~ 41070892 (+) True gpr37l1b
XM_039800494.1 mRNA downstream 389830 41099907 ~ 41103714 (+) True LOC120559073
TU76286 other upstream 248143 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 556698 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 594030 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 688003 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 786955 39808857 ~ 39918363 (+) True G56127
TU76475 other downstream 390517 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 411198 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 1761843 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 2668269 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 2807873 43517950 ~ 43518074 (+) True LOC120559932

Expression Profile