RNA id: XM_039801141.1


Basic Information

Item Value
RNA id XM_039801141.1
length 7760
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC120559456
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14926288 ~ 14991890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCAACTTACAGAACTGGCTTCTTGGGCTTCGGGAGTGTTTCCCATTTAAACAAACAGTGCCGAAGATGGCGGAGAGTTAATGGTGTAAAGAAGAAATTATCGATCCGGTAGAGAGATACGTCCACAAGacTCCATTGACCAGCCCACATAGGACCACACCcccagagagaggggaggggggatcTGATCGTCCATCATCTCGGGCGCTGTCATAAGGTTTCATCAGACAACAGCAAGCGGGGGTTTTGTCTAACGATGAGCAGCAGACGGGGGAGGCAGGTAGACAGGCACACAGGGAGGCAGACAGGAGGATATGCGAGAAGAGACGCAGGTGCTGATATGTGTACACGATGAGCGGACTGGGGGAAAACTCCATGGAGCCTCTGAGCTCAGAAAACCGGAAACGCAAGCTCTCCACTTGCGACACGCCTGGTCTGGGGTGTGAGAGGAAGCGACGGGAGCAGGAGAGCAAATACATAGAGGAGCTGGCGGAGCTGATCTCTGCCAACCTCAGCGACATCGACAGCTTCAACGTCAAACCAGACAAATGTGCCATCCTCAAAGAGACGGTGCGCCAGATCCGCCAGATCAAAGAACAGGGAAAAGCTTCATCCAACGACGACGACGTCCAGAAGTCAGATGTGTCCTCGACAGGTCAGGGGGTCATTGACAAGGACCACCTGGGGCCGCTCCTGCTGCAGGCTCTGGACGGCTTCCTGTTTGTGGTGAACCGGGAGGGCAGCATCGTGTTTGTGTCTGACAACGTGACGCAGTACCTACAGTACAAACAGGAGGAGCTCATCAACACCAGTGTGTACAATATTCTTCATGAGGACGACAGGGAGGAGTTTCACAAGAACCTGCCCAAGACCAACataaATGGAGTGTCGTGGGGAAGCGAGGCAGCCCGACAGAAGAGTCACACCTTCACTTGCCGGATGCTGGTCAAGTTTGGCCACGCCCACGGCCCCATGGAGGATGGGCCAGGAGGGCCACGCTACGAGACCATGCAGTGTTTTGCTCTTACCCAGCCCAAGGCCATGATCGAGGAGGGGGAAGACCTTCAGTCATGTATGATCTGTGTGGCCCGTCGGGTGACAGCCATGGAGAGAACGGAGAGTTTTAATACCCGGCATGAGCTCTCAGGTAAACTGATCCAGATCGACCAGAACTCTCTGCGAGCGTCAATGCGTCCAGGCTGGGAGGATTTGTTGAGGCGTTGCATTCAGATGTTCCTTCAGCACAGTGACGGGCAGCCCTGGTCGCACAAACGGCACTACCATGAGGCCTTCCTGCAGGGTCACGCTGAGACACCCTTGTACCGCTTCTCCCTGTCTGACGGCACTCCAGTCACAGCCCAGACCAAGAGCAAACTGTACCGTCACCCCATGAGCAACGAGCCGCAAGGCTTCATCTCCACTCACCTACTACAAAGGGAACCAAATGGCTATCGCTCAGCTCAGGGTGGGAGCATGATGCCAAACACTATGAGACAACCCGGCATGGGAGGCCCCAACCCGAATGCCCAAATGAACATGAACACCAGTGGGGGGATGGGCATGGGAGGCATGGGCAGCATGAGCAGAGGCTACGGCATGAACGAGCAGGGCCACATGGGTCACATGGGACCGATGGGAGGCGCATCTATGTACGGAGGGAgcggtggaggaggaagtggaggTGGAGGCATGGGCAACCGCATGATGCCGATGAATCAGATGGGGCAGATGAATCAGGTGGGGCACATGAATCAGATGAATCAGATGGGTCCCATGAATCACCCGGGACAAGGCATGCAGCAGCACCCACAGCAGCCCCCGTTTCAGAGCAGCGGAGGGTTTGGGCTGAGTGGCATTAACAGCCCTTCTGGAAGCCCGAGAATGGGCTGCCCCCAGCAGGGGCTCCTGATGTCACCCCGGAACCGAGGAAGCCCAAAGATGGGCGCCAACCAGTTCTCCCCTGGAGGTATACACTCTCCCATGAGTGGCATTGTCAGTGGGGGAAGCACCACCACTTTCTCAAGCAGCTCCCTAAATGCCCTACAAGCGATCAGTGAAGGAGTAGGAAGCTCCCTCCCCTCAACCCTGACGTCGCCCACGCCAGCCCACAAACCAGACAGCTCTCCCAGtgtccactcctcctcctcttcctctcagcCCAGTCAGCAGGCCAAACCTGGCCAAGATGGCTCCAAAAGCCCAGCAGGAGGCTTAGGGCCTGGGCCCAGCGACCATCACCACCCtatgcaccatcaccaccatcatcaGCATCCTCAGGCTGAGAGTTCTGGAGACCGACCAGACAGCCAGGCAGCTACAGCGACTAAAGAGTCTGGAGAGGGAAGCAATGAGGCAGGGGTGGCCAACTCTGAACCGCCTCGGAGGGTGCCAGACAGTAAGGGGCATAAGAAGTTGCTGCAGTTGCTGACATCCCCAACTGAGGAGCTGGGAATAGGTGGCAGCGGGTCAAAAGGGCCCCCTGTACCACCCCCATCAACCAGCAGCAGCATTCCTGCATGCTCAGACGGTAAGGACCCCACTGGAGGCATGACTAGCCCATCATCTACTGGGgtgtcctcttcttcttcagccAATCCAGGCCAGACCACCGGGCCAGGGGGCGTGTCAACATCAATATCGCCCGCCCACTACACAGGCTCGCTGCAAGAAAAGCACAAGATCCTCCACAAGCTTCTTCAAAATGGAAATACCCCAGATGAAGTAGCTAAGATCACAGCCGAGGCTACAGGAAAGGTGACACTGGGGGGCCAGGAGGGCGGTGAGGCTGGGACAGGAGGATCGGGAGCCGGGGTCACAGAGCCCAAGCAGGAGCAACATAGCCCCAAGAAGGAGAAGACCCACGCCCTCCTCCATTACCTCCTCAACAAGGATGATTCCAAAGAGCCGGTGGATGTCAAGCCTAAACTTGAAGAGCTAGATGGGAAGGGAGCCCCGGGGGCCGCTGGCGGCCCTGCACGGGGTGGGCCTGGATCTGGGCCTGGCCCTGCCCCTGAACATCCTGAGAGCAAGATCAAGTCAGAGCCACCTGATGACTTGCACAACCTGGAGTCTATCCTTGGAGATTTGAGGGGTTCAAGCTCTGACTTTTACCCGGATCAAGCTGGAGGTGGAGGGGCTAACGACACAGGAAGCAAACCCCAGGGTTGCCTTGACGACAGCCTGCAGGGGAGTCCAGGAATGGGTCCGGGACCTCGGGGGCCCTTCCAGAGGGCCATGTCCATGGAAGGGAAGCCTCTTGTTGGGCCTGTAGGAGCAGGCAGACGCCCTATGCTTATCAAGCAAGAGAACATGATGGGCAGCCCAGATGGCTACCCAGGAAACATGGGACCAATGAATAGGGGAATGGTTCCTCAGAGGTCTCCCATGGGGGGGTCAGGGGACTGGGGCATTGCCCGCTCCAGTGCTAGCCCAGTAGGCTCCGCAGGACACCCATCCATGATGCGCCCAGGCATGGAGTACAACAATAGTAAGGGCATGATGTCAGGACCTATGGTCGGCCGCTCCAACAGCGTACCAGGCACCAGGTCTATGCTGCAGCAACAGCTCATGGATATGGGAGGCTCTGCTGACATGGGCATGGGTATGAGCCCCTTCAGCCAGCAGGGCCAGCCCAACCAGTCCCCCTCCTGGCCGGACACTATAATGGGCATGGAGGGTAACAGacgCCAGTTTGGAAACACCTTAGATGATCTTCTGGTACCTCCCACCACCAGTGAGGGTCAGAGCGACGAGCGGGCgcttctggaccagttggactCTCTGCTGAATAACACAGACGGCATCGCTCTGGAGGAGATAGACCGAGCCCTGGGCATCCCAGACCTCGTCAGCCAGAACCAGGGAAGTGAGCAGCAGCTGGACCCTTTTCCAGGGCAGGACACATCCATGGTGCTGGACCAGAAGCCTCTTTATGGACAGGGCTATCCCGGACCCCCCGCCATGCCTATGCAGTCTGGCTATGGAGGGAACCCCATGCAGGGACAGGCCCAGCAGGGTGGGTTTGGGCCCATGCTGTCTCAGATGGGCCAAGGTGGCAGCTTCCCTGGTATGGGTGGAATGGGCAGCATGGGGCACCCTCGTGCCAACATGATGAGACCCAGGATGATGACGGCCAACAAGCCCATGCGGCTCCAGCTGCAACAGAGGCTGCAGGGACAGCAGTTCATGAATCAGACACGGCAGGGCATGGGCATGAAGATGGAGAACCCAGGAGGCAACCCTGGCATGAGGCCCAGCATGCAGCCTGGCATGGGAGGACAGCCAGGCTTCCTCAATGCTCAGATGATGGCTCAGCGCAGCAGGGAGATGGTCACCATGCAGATGAGGAGGCAGCGCATGATGATGCtgatgcagcagcaacagcagcagcatgcgGCAGCAGCCGCTGCCGCAGCCGCAGGAGGATTCAGTCCCCCTCCAAACGTTACGGCTCCTGGTGGCATGGAGAACCCTATGGGAGGGCCAAACATGGGCCAGCCGGGCCCCCAGCAATTCGCCTATAGTGGGAACTATGGGATGGGCCAGCAGGGAGACCCCTCGTTCGGCCCATCAGGCGGCAGTCCTTCTAACGCCATGATGCCCAGCCGCCTGGGGCCTCAAAACCCCATGATGCAGCAGCACCCGCAGGGCGGTCCCATGTACCAGGGGGCAGATATGAAAGGCTGGCCGCAGGGAGGCATGGCACGCAACAGTTCGTACCCTCAGCAGCAGTTTGGCCAGCAGGGACCTCCGGGGCAGCAGCAGTTTGGGCAACAGGCAAATCCAGGCCAGTATGGGGGCATGATGATGAACGGGGGCATGCCagccagtggaggaggaggtcACATGGGCCAGATGGGAGGGCAGATGGGTATGAACCCAATGGTGATGGGACGCATGCCGATGGGGCCTGATCAGAAATACTGCTGAGCATCGTGACGGAAGCATTCGTCTCACTGTGATCTCTGTTCAGAGATAGGACACGGCTGCAGCACTGGAGTGTGTGTGGAGGACCAggcggtgtgtgtctgtgtgtagtgcTGCACTCCCACCAGACGGGGGAGTGAACTTCCTTTGGACTCACGGCCAGTAATGGCAGTCTGGCAACATGGGGAAAACAGACAGACTGtcacaaacagaaatgaaaaCACGCAGTGTTCATAAAAATCAGAAAcactgtgacacacacataaatcctAAAACAGTCAGATAGATGTGATTCCTCTCGTAGACCGTAGTTTAATATTCCTCTCTTTAtgagcggtgtgtgtgtgtgcgcctcaGTAAACACACGTCGCTCACTGGACCAAACAGTGAAGGTGGACAGACACTTGAGTCGATCACAAACATGAACATGGACGAACGTGTTAAGACATCCTCTCCTCTGTCGAATGTACCACGAAACTGTGTTCAGATTTAAAATGTAGGATTCCTCTCTTGTTTCTGAACTTTGtgggatttttgtttttacccgccatctctctgctgctcctggAGGATCTCTGCGTACGTAAAGTAAACACGGTTCTAGATGATGAACCATCAGATTTTGACACTCAGATGAATGTCATAAAGCAGTAGTAGCACATTGTTTCGTCCTCCAGGATGCTGCTGGGCTAGTACGAGTGAATTACTTGTTGGCTTATTGCACTTTAAGGAAAGGCCAACATCAAAAGGATTGTGGCAATATAGAGGCCTTTACCCAAGAATTAATGCATAGCAGcagttgtttattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttccaactTTTCCTCTCTGGGTAATGGGGGCTGATTGGAAATAGGTAACCTTGATGATCTTTGTTCTAAAGTGAGAACCAGTAGAAAGGCAGTAAGCACAGATTTTATCCAATGCTATCATCTTCAGTGGTACCGATTTATTACAACCAGAGAAATTAACAATttttaagtcattttaaaatcatTCTTGAAACAAATggacaattaatgttcataacACCACTTATATTTATACAGATTCCTTACCGTGATTATTTAATCATTCAAGAGGTAATTTTTAAATCCAATTGTTGCAGATATTTTGGTTACCTGGCACCAATTTACAGTGTTACTTGTCAAGTGCAGAAATAAAATTGATTGCCAATTATGAAATTATGTCTATAGTAGCTCCCACTGTaagagaaaagtgtgtgtgttagatttcTAGCAATATTCCTTCCTCCTGGTTTTCCTCTGAGGACAAAGCTAAAGTATAATTTACTCAAAGCGACGGCACTGCAGTATTAGACATGATGTCTTGTTtggagcttttttttcttttgtctgtgaATATGAATTGTAAATAAGCTTCAAAtgtactataaataaatatatataagcTTTTGTAGGTCACATACTGTTTTTGCACAGATTGTAAGGCTTGATATTTAAAAGTGTAATTTTCTTAATCCATCATAGGTCagcttttattttcaatactttAACCATCGGTTGGAAAGGAAGGACCTCCTTTTTGTGAGCAGTACGTGTAGATTTTCTTTCATACTGccactttctttctctcagAAAGCACTATTTTCTGAGGGCATAGTCTTAGCTAAAGAGGTGCTagtgtgtaattttttttctaaataaattatttttcttttgacaaataaaaggaaacacaaaATATGCCTATACAGAGTTGACACATGATTGTGTTAGGCTTCTAGAGGCCCAGATGTCTTACCAGAATGTGGGGTTGATGTTTTCTAAACCGAACCTCATGCTTCCATGTGTGACTTTCTGTGCTTTGACTTTTGCAGATACGAACGTTCGGCCTCCGATACAAGACTTTAGAAATCAGCCCCACCGTATAACTGTCCATAAGTCCTTTTGGTTCATTCACAGATGTTTAATCGTGATGAAAGCAACACATGAAGTAGTTGGAATCCCTAAATTACCTGTCAATCTTATGACAGGTGACATTTaattttgccttttatttttattggatTTTCCTGTGATGCTTTTGTTGAGAAATCTAGCTTTGAACACATGCTCAATCCAAAGATTTTTGTTTGTCATTCTGCAGTGCTTAGAAACCGTTCCTGACGTAGATCGTGCAAGTACTCATGTGTGCTTTTACTGTCGTACATAACCTATAATatacattgaactaaatatgttTAATTGCATATATGATATCCCCCATCTGTATGACATAGAGTAGAGACGAGTCTGGTTCTGCTGAGGTGGTTTGAGTTTTTGTTTGTGATTGTTTCTTCCTTTCTGTAGAACTTATGGCCAGTTGAATTGTGGTGCTGCAAACGGTTATTTCACAAGAGAATGTCGAGATTTTCTAAAATGAAAAGGTTTCATGATTGATGTCATTATGTCTCAGAATAATACtttggagatgtttttttttaaaccccaaTCTCAATGAAGAATATGAAATCTACATAtttaaacaaaagcaaaaagtCTGTTTTGCTTTAAAGGAAAGAAACTCCTCTCAGTTCATCGTTAGAgctaaagaaaagagaaacacatCTGGGAAACAGTCATTATTACAGGATGTAAAATActattgcatttctttttcttacCTTGTTTGTTGATGTTAATATCTATGTAAATACAaatttatatttaaacatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66660 lncRNA downstream 23429 14902089 ~ 14902859 (-) True G49882
TU66656 lncRNA downstream 36774 14888775 ~ 14889514 (-) True G49878
TU66654 lncRNA downstream 40902 14884146 ~ 14885386 (-) True G49876
TU66637 lncRNA downstream 60541 14862795 ~ 14865747 (-) True G49862
TU66616 lncRNA downstream 72471 14845338 ~ 14853817 (-) True G49845
TU66771 lncRNA upstream 79947 15071837 ~ 15073424 (-) True G49977
XR_005639238.1 lncRNA upstream 140762 15132652 ~ 15137753 (-) True LOC120559280
XR_005639236.1 lncRNA upstream 222080 15213970 ~ 15214624 (-) True LOC120559278
TU66790 lncRNA upstream 226171 15218061 ~ 15218563 (-) True G49991
TU66803 lncRNA upstream 310508 15302398 ~ 15302637 (-) True G50004
XM_039801430.1 mRNA downstream 5516 14905051 ~ 14920772 (-) True LOC120559597
XM_039801574.1 mRNA downstream 92357 14823706 ~ 14833931 (-) True LOC120559665
XM_039800515.1 mRNA downstream 112081 14805105 ~ 14814207 (-) True ddx23
XM_039800087.1 mRNA downstream 176267 14707418 ~ 14750021 (-) False LOC120558823
XM_039801150.1 mRNA upstream 10071 15001961 ~ 15010995 (-) False zgc:113278
XM_039801149.1 mRNA upstream 10071 15001961 ~ 15010994 (-) True zgc:113278
XM_039800885.1 mRNA upstream 84939 15076829 ~ 15094038 (-) True col9a3
XM_039800887.1 mRNA upstream 84939 15076829 ~ 15091424 (-) False col9a3
XM_039800895.1 mRNA upstream 103299 15095189 ~ 15101900 (-) True ogfr
TU66613 other downstream 72471 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 72471 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 391683 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 781066 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1672816 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 1289154 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2696225 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2847654 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3888475 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4707883 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile