RNA id: XM_039801150.1


Basic Information

Item Value
RNA id XM_039801150.1
length 2288
RNA type mRNA
GC content 0.46
exon number 12
gene id zgc:113278
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15001961 ~ 15010995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGACTCTGGGCGGTTCATGAATGGGTTTGTGAAGTGGGAGGGCCCGTCATCTGACTTTACCAGTCAGGGAAAAAGTAGGTGTTGTGCTGTAGTGTTTGGTTTGGTGCGATGCAGCTTCATGACTGTTTTTAAACACACGAGCAGCGGTTCACTGTGCGTACGGACCGCAGCGGAGCGTTTGACAAGCATCCTCCATCAGTTGAGGCGCGCAGGCTAACAGCAGCCGTATAGCGGCGGGGAAAGCTAGCTTCATCCCAGCTAGACGGCAGCCCAGAGCCAGAGAAGGGAGAGCCGCGTCGGTGAGCCATGGGGTTCCGCAAGAAGAACAAGAGCCCGCCGGTGCTGAGCCACGAGTTTGTGATCCAGAATCACGCCGACATGGTTTCGTGTTTGGCCATGATAATCCTCCTCGGCCTGATGTTCGAGGTCACAGCCAAGTTTGCCATCATGTTCATCACAGTCCAGTACAACGTAACACAAGTTCTTGATGAGAAGAGTGATCCAGTAAACCTTTACCAGTATGGACCTAAAGATGTGGCCACTGTGTTTTTCTACCTGCTTATTGCGGTCATCCTTCATGCCTTGATACAAGAATATATTCTCGATaAAATGAACAGGAGGTTGCACCTGTCAAAAACCAAACACAGCAAGTTCAACGAGTCTGGACAGCTCGCGGCGTTCTACCTGTTCTCCTTCATCTGGGGCTGCAGCATCCTAACAGCGGAGGACTTTGCAACAAATCCTACTTTTTTATGGGAGGGTTacccacacactcacatggTTTTCCAGGTCAAGTTCTTCTACATTTGCCAAATTGCCTATTGGCTCCATGCACTTCCTGAGCTGTACTTTCAAAAAGTTCGGAAGgaGGACATCCCCCGCCAGCTCTATTACATTTGCCTTTACGTTGTCCACATCGCTGGTGCCTATGTCTTAAACCTCCACCGACTGGGCCTGGTGTTGCTGGTCCCTCACTACCTGGTGGAGCTCCTGTTCCATGCTTCACGCCTCTTCTACTTCAGTGATGAGAACAAGCAGAAGGGTTTTACTCTGTGGGCTCTACTTTTTGTCATCGCCCGCCTCCTCACCCTCACACTCTCAGTTCTGACGTTTGGCTTCGGGCTGCCCCGTACAGAAAACCAGGGCTTTTCCCTAGCAGAAGGCAACTTCAATGTGCTCACCATAAGGATGACTTGTCTGGCAGCTATCTGCCTGACACAGGCTTGGATGATGTGGAAATTCATTAACTTCcagttgaaaaagtggagggAGCACAGCCAGAACCAGGCGTCAAAGAAGAAGGCGGTCAGCCCAAAGAGCAAGCCTCACAAAAGGGAGCCTACAAGGGGAGGTGCTGCCAATGGGGTTGTGAAGTCCGAGGATAAAACATCACCACGGGCAAGAAAAGCCAAAGCTTCATAGAGATGGAAGAACAGATGCCCTTTTcctgtgtgagagagactgtGATTTCTGTTTGTCAAATGTGGCATGTTTTGTCCTTTCTGCTTCACCTTTTCAATGATCCTGACATTGCTATGGAGCACACTGTTGTATTGTACTGTTGGCCATATTCTTTCCTCTCCTGGACCTGGAGTACTGCTCTACTACTAAACCACTGTGCATGTGAAGCTCTGTGCAGAAAAGACTACACTACCTGTCTGCAGACAGTTGGAGTTTGGAGTCTTAGTCCAGAGCAGGGATGATATGAAGATGCCATTCATTTTTGCTCCCTTTAGCACTCCTTATTGGGTTTTGGTCTTTAACGTCCTATGTCTGTGTATGGCCGTGTCATAtggagagggatggaggagcAGAGGACTTGTGTACCAGCCTGTTATTAAACTGTCTCAGatgtaaaagagaaaaaaaactgacttaACCCTACACTGTACTTAAATATGTGTCAGATTTTTAAGCTATTTTTATAGAGGGGAAACTCACTGTTAAATTCACTGTTGTTCAGTACACGTGTGAATATTTGTTTTGCATCCATATTGATATgaattgttttttatataaGAATGAAGCTTGCTGAACTGTTAGCGTGGATATACATTGTGGTATGAgtgtaaacatttatttagccTAAGGGTTTATTTAACGTCATGGCCTTATTAGAGCAAAGTGAACTCTGTTGTATAACAGTGCTCAGTTAACACTATGCTGCAGGTGTATACACTGCAGCTATCACAACTACATGTTTTATGATAGTAAAGTACACCATCATACTGACACTAGTCATCCACACATCAGTTTAAATATAGTATCTGAGGAGCAAATGCACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66660 lncRNA downstream 99102 14902089 ~ 14902859 (-) True G49882
TU66656 lncRNA downstream 112447 14888775 ~ 14889514 (-) True G49878
TU66654 lncRNA downstream 116575 14884146 ~ 14885386 (-) True G49876
TU66637 lncRNA downstream 136214 14862795 ~ 14865747 (-) True G49862
TU66616 lncRNA downstream 148144 14845338 ~ 14853817 (-) True G49845
TU66771 lncRNA upstream 60842 15071837 ~ 15073424 (-) True G49977
XR_005639238.1 lncRNA upstream 121657 15132652 ~ 15137753 (-) True LOC120559280
XR_005639236.1 lncRNA upstream 202975 15213970 ~ 15214624 (-) True LOC120559278
TU66790 lncRNA upstream 207066 15218061 ~ 15218563 (-) True G49991
TU66803 lncRNA upstream 291403 15302398 ~ 15302637 (-) True G50004
XM_039801140.1 mRNA downstream 10071 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA downstream 10071 14926288 ~ 14991890 (-) False LOC120559456
XM_039801142.1 mRNA downstream 10078 14926288 ~ 14991883 (-) False LOC120559456
XM_039801144.1 mRNA downstream 10078 14926288 ~ 14991883 (-) False LOC120559456
XM_039801143.1 mRNA downstream 10082 14926288 ~ 14991879 (-) False LOC120559456
XM_039800885.1 mRNA upstream 65834 15076829 ~ 15094038 (-) True col9a3
XM_039800887.1 mRNA upstream 65834 15076829 ~ 15091424 (-) False col9a3
XM_039800895.1 mRNA upstream 84194 15095189 ~ 15101900 (-) True ogfr
XM_039799839.1 mRNA upstream 656183 15667178 ~ 15681715 (-) False LOC120558694
XM_039799838.1 mRNA upstream 656183 15667178 ~ 15681714 (-) True LOC120558694
TU66613 other downstream 148144 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 148144 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 467356 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 856739 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1748489 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 1270049 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2677120 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2828549 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3869370 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4688778 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile