RNA id: XM_039801180.1


Basic Information

Item Value
RNA id XM_039801180.1
length 3045
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC120559472
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9312886 ~ 9354630 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAAAGAGGGAGGTGGTAGTAAGAGTGTTACAAATCACAGCACTCACTGCCTTCACAAGTCAGAGGAGCAGATCTCTGTTTGGGTCTTGCATGACGGAAAAACAAAATCTTTGCTATAAAAAGAGGATTAGTTTCACGGACTGAGCGGTTGCATGGATGTTTCCCGTGAAATCTGAGCAGCTATGATGCCAAACTTAGGATCAAAGAAGAAAGACAATCTATCCAGAATGGACAGATACACTGAGGACCTGCCACAGTTGAGCAATGAGATGCAGCTGAGCATCATGAACAAGGTGAAGAATGGAGAGCTGTCCATCGAGGATGCCCTAAACCAGGCCAGGGAGCAGCTGGTCCAACAGAAGAACCTGGCTAAAGAGGAACATCAACCCTCACAGTGCAACTTCAGTGTCTACAAGCACAGCCACTACAGGTGGCAGAAGCGAGTTCTTCAGATTGATTTCAAGACCAAAATGCTGTGCAGCATCAGCAAAGGAATCGTAAAGCGACAACTTCCCTTTTCCATTGTCAAGAGTTGTGATGATGGAGTAGGTTCCAGGTTCTCCATTTCCTTTAAAGGACATCATGATTATGATTTGGAGGCCACTTCGCTGGAGGACAAACACAAGATGATGCAGCTTGTGAATCAGATCATTTACGGGAACATATTCAATGATCCTGAAGAGGACGATGCAGAAACATTTCAGCAGCCTCAAGTGTCACAAAATCTTCGGGAAGGTGTCTTGTTACTGCACAGAGGTGGCCTGGCATCATTCAGATGGGTGAAATATGAGGTCCAGCTCCACCTAGGTCAGCTAACACTGATCCCCTTCAGGGGACAAGGCCCCGCTGACGGCGAGGTGACATCCACGGTGCCCGTTTCCATCGTGATTCACCTGTCAGACGGCGACACCAGCGTACAGAAACCTCACAGCTCGGACACTTTCACCCTGATCACCCACAAAAATGAGTACCAGTTCCGGGTGCCTGTACCAGATCAAGCATCTCCCCCTGAGGCTGTCCAGAGGGAGCGAGATGCTTGGGTCCAGGCCATTGACAAACTGTGCTCAGACTGGAAGAGGAAGTCAAAGGGCGAACAAATGTTTGTGGAAACAAAGAGTCCCCAACATCTCAGCATAGCCGAAGACACAGAGGACACTGACACAGATCTTGAGTCAAGCGGTGGATTGGGTGGCATAAATAAATATCCTCCAGTTGATTATGAAAATCCCACTTCTGGCAGTGGAGACAATTCATCAGCCGGTGACACGAGTCAAAGTCATCCCCCGGCCGGTTTTATCAAGCCTGTTCCTAAACCTCGCAGCACGAAGAACACTGCTGTTACCAAGCCTGATATTTTGCCTCCCGTGCCATCACCAACCTCCCCCGGTGTCTTAGCCTCATCTTCTCCCACCTCCCCTCAACCCTCACCCTCCAAGACTGCCCTCACATCCTCTTCCAAAGTCCCAGAGACTCCTAACCACGAATCGGGCTCGTCGGTTGTGAAAACGCCTGCACCGCCGATCatcccgcccccccccccgcctttAGCCTTCAAATTCCCGATGCATTTGGGAAAACCACGAACCAAGGCTTTCCACTGGGACCTAGTCACCTCAGAGAAGATTGCAAAATCATTTTGGGTACAAGAAAGCAGCAGGAGGATTGAAATCGACATGTCGCGCTTATATGAGCAATTTTCCGTTAAAGATCCGGGGACATTTGGCGCGGCTGAGCCGACCAACACGCAGCATATTATGCTCAACCAGAAGATTGCACACAACTTCAACATTTTCCTTAAAAGTTTTCCAGTGAAACCGGGCGAGCTGAAGGACAAACTGTTCATCGTTAATGAGGAAGATGGAGGCCTGTCTGATGAGCACATCACCTCTCTGAGGAGGTACGTCCCCACGTTGGATGATGTGGAAATGTACAAATCTCACAAGGGACCGGTGACAGAGCTGCATATTGTGGATCAGTACATGCTCGAGATGTGCAACATCCCCTGCCTGAACACGCAGCTTGACCTGCTGCTGATTCTGAGAGAGCTTCCGATCAGCATGAACGACCTGCAGCCTCTGATTAACCAGAAGATCAGAATGTGCACGCAGCTGAACAACAGCAGGTCATTTGTTTCCGTGCTGGAGTACCTCCTCGCCATTGGCAATTACCTCAACGAGAACGCCAGGAAGGAAAAGGCCAAGGGATTCCGCCTCTCCTCCTTAACTAAACTCTCCCAGCTCCGTGGGAGAGACAGGAAGTTCACCTTGGCCCACGCCCTTGTGGAGCAGATCATGTTGCATGAACCGTGCCTGGCCACTTTTACTCAGGAGTTGGCAGAATTTGAAACTGTCCCTGGAGCTTCCATCAAAGGCCTGACCGCAGAAGTAGATGTCCTGAAGAATGAACTGCAGAAAGTCATTCAGTACAGGAAAACCTCCAGGAAGAGAAATGCTGGGGTTCACCCAAACTTCTCCAAAGACCTGAAGATGGCAATTGAGAAATATAACACGGATCTCGCTGCACTGACGAAGACGTGTGAGGAGATGAAGAAACTCTACTCCGTCATTCTGGTTAAATTCGGTGAACTGGCGGATCAAGACTCTCAGGAACTCTTTGGGTTGATCTGTCAGTTCATCCACGACTTCAAGCGGGCCCATGCTGAAATCATATGACTTATACTGTATAGAGTACATATGAAAGAACACCTGAGACTGCAGTGATGCTTattaaaacaaaccaaacaggTCTTATTGTCTTAGTCACAGTTCAGAGAGATtaagatacaaaaaaacaaaacaggaaataaCTGTTAATGCAGTATTTGATATTGAAGATAGAGTAACATGTTGCATGGATTTATATTTTTAGTAGCATATTATATATTTCTCCTGTGTTGTacagatattttattttataatgggTACTGGATGCAATTCATTGTATATGACACACATTATGAAGTGTATAGTCATGCTCATGCACATGGATAACAGGATGTCAGTGGAAATTAATTTTGTGAATATAAAATTGATTTACGTATGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64502 lncRNA downstream 27634 9284917 ~ 9285252 (-) True G48311
TU64497 lncRNA downstream 30364 9282296 ~ 9282522 (-) True G48306
TU64476 lncRNA downstream 100061 9210924 ~ 9212825 (-) True G48285
TU64434 lncRNA downstream 224143 9077075 ~ 9088743 (-) True G48255
XR_005639096.1 lncRNA downstream 566374 8743335 ~ 8746512 (-) True LOC120558360
TU64646 lncRNA upstream 24370 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA upstream 24370 9379000 ~ 9385221 (-) False LOC120558858
TU64642 lncRNA upstream 72576 9427206 ~ 9493872 (-) False plekhg5b
TU64661 lncRNA upstream 210334 9564964 ~ 9565214 (-) True G48430
TU64673 lncRNA upstream 373244 9727874 ~ 9729476 (-) False c1qtnf12
XM_039801181.1 mRNA downstream 20748 9287548 ~ 9292138 (-) True cbln4
XM_039800353.1 mRNA downstream 113912 9180687 ~ 9198974 (-) False bcas1
XM_039800160.1 mRNA upstream 15331 9369961 ~ 9371630 (-) True irx7
XM_039800159.1 mRNA upstream 25518 9380148 ~ 9408403 (-) False LOC120558858
XM_039799968.1 mRNA upstream 72970 9427600 ~ 9519455 (-) True plekhg5b
XM_039799971.1 mRNA upstream 72970 9427600 ~ 9507250 (-) False plekhg5b
XM_039799970.1 mRNA upstream 72970 9427600 ~ 9477291 (-) False plekhg5b
TU64005 other downstream 1125335 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1206691 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1426036 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1814084 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1825826 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 335900 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 353701 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 670364 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1288089 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2534311 11888941 ~ 11891046 (-) False srxn1

Expression Profile