RNA id: XM_039801194.1


Basic Information

Item Value
RNA id XM_039801194.1
length 1185
RNA type mRNA
GC content 0.47
exon number 2
gene id tcf15
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11878352 ~ 11880620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAGAGCCTAGTTGAGCAGGTAGTCCTGGTCCATCCCTAAAACAGGCCAGTCCAAAAACTGACTTGTGAAAAGTCGGTCAGCTTTATTATAAAcgtcctttttttccccccgcaGGTGGTTACATGTTGCGTGTGTGCCCTATTGAGATGTAGCATTGGTCCCTGCGTTTGTTGTCGGTCTTAACTACCAGAGGATTTGTGGCCGGGACTAGTATAACTTGGGAAGATGACTTTCGCCATGCTGCGGCCCGTGGCGACACACTTGATCTATTCTGACTTCACCGTCACGTCCGAGGATGATGAAAACCGCAGCGAAAGCGACGGCAGCTCGGAGCAAAGTTACTGTGGCTCCACCAAAAAACGCAGAAGGATTTCGCACCGACTGGAAGGGGAGGCCCCGGTGGTGGTGAAACAGAGGAGCGCAGCTAACGCCAGGGAGAGAGGCAGGACCCAGAGTGTCAACACCGCATTCACAGCTCTCCGGACTCTCATACCCACCGAGCCGGTGGACAGAAAGCTCTCCAAGATTGAAACTCTCCGACTGGCATCCAGCTACATTTCCCATCTGGCCAACGTGCTTCTTCTCGGAGACGGCGGCGCTGATGGACAGCCCTGCCTCGGCGCGGTTCATGCGCGAGAGAGCGGGGCGCAGCAGCCGCGGACCATCTGCACCTTCTGTTTGAGCAACCAGAGAAAAGGGataAAGGATGccaaaaactgtttaaaaatgcGAGGGCTGGGTCCGCTGCGAACGAGACGCTGACTGAAGACCAGTGAATGATTAGCAACCTGAAAATCCTCAAAGACTTTCTCAGGGAAGAGTCAAAGCTGGTGTtagcacaaacactcacaccaAGACACACATGCTGGATCAAATTTTGGAAACCAAGAAGAGACTATTTATACTTGACTGAGAAAATTTAAGCATAAGCCTTTCAAAGATGCAGTGCATTTGTTTGAAACTTAtgagtttttttcctttttttttttttcccactcgaaagtttaaaataaaatatattttatcaaaataaaagctgttaTTTTCCTGCTTCCCAGGTTTTTCCGGTGACAACAAGAAACAGTTTCATGAAGAAAATTCAATGTCAAAATTTGTTTCAGATTGTGTTAATGATTGGGACATTGATGTAAACTAAATGCATGCAGAGTAAAACGATGAAATt

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09070 TCF15, PARAXIS; transcription factor 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65307 lncRNA downstream 262643 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 271738 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 277844 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 299364 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 305363 11564071 ~ 11572989 (-) True G48903
TU65449 lncRNA upstream 5345 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 78759 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 122647 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 239038 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 239132 12119752 ~ 12121550 (-) False G49084
XM_039799397.1 mRNA downstream 6891 11865707 ~ 11871461 (-) True LOC120558412
XM_039801624.1 mRNA downstream 14658 11855050 ~ 11863694 (-) True slc13a3
XM_039801842.1 mRNA downstream 30265 11844711 ~ 11848087 (-) True LOC120559814
XM_039799420.1 mRNA downstream 36779 11835663 ~ 11841573 (-) True LOC120558426
XM_039800928.1 mRNA downstream 53135 11818150 ~ 11825217 (-) True LOC120559301
XM_039801936.1 mRNA upstream 8197 11888817 ~ 11891139 (-) False srxn1
XM_039801638.1 mRNA upstream 18198 11898818 ~ 11907613 (-) True scrt2
XM_039800835.1 mRNA upstream 59640 11940260 ~ 11945510 (-) True slc52a3
XM_039800849.1 mRNA upstream 72555 11953175 ~ 11957391 (-) False LOC120559253
XM_039800848.1 mRNA upstream 72555 11953175 ~ 11957391 (-) True LOC120559253
TU65038 other downstream 1223534 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1852527 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2154218 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2180245 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3772157 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 8321 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 246266 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 246266 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 269174 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 340117 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile