RNA id: XM_039801204.1


Basic Information

Item Value
RNA id XM_039801204.1
length 2084
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120559488
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16725977 ~ 16730653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCAAGTGCTTTGAATGGCACAATAGCTAAATGTACAAAGAATAGCTGAGGCCATCACATACTGACATCCTTCTCAGCGGTTTAGTATTCCTCTCTCCACCCACTGTCTCCACCCATCACATTTCCTCCtcccctgagagagagagagagagacacacacacacagggtcagAGAGAGAATAATTAAAACTAGACAACCTTAAGATGACTTGGAATAAAGTAGTCctgttctttttctctccaACATTTAACAGAGGCTCATTTGGAAAGCTCCAACACTGAAATGATCCAGGCATCATTCAACATCCCAAGTTCCAGATAAATTTCTATTTAAAGTACGAGGTTGACCGCAAGAAAAGACATGAGGGCGCAAACTTTCCCAAGGGCGCAAATTCTGCAGGAGTTAACTTTGCGATGCCAGGCACTCGCAGCCAATGACAACAGGGGCTTTAAACAGGAGTTTGAGGAGCTAGATGAAGTTGGCAAAAACCTCCCCACCCGAGCAGGGGACTCAGAGGCCAACAGAGAAAAGAACAGATACCCCTACATACTGCCATATGACCATTGTCGCGTCAGGCTGTCAGTCCAAAACTCCCAACCACACACTGACTACATCAACGCAAATTTTGTGCCTGGTGGAGGATCAGAAAGAGACTTCATCTGCACCCAGGGTCCTTTGCACAACACCATGGCTGACTTCTGGAGGATGGTGTGGGAGCAAAACGTCAGGATAATCGTCATGGTGACAGCTCTGAGACACAAGGACATGGTGCTGTGTGATAGGTATTGGCCTCTGGAACGAGGCACAGTTAATCATGGACTGATCCAAGTGATGACAGTGACCTGCAAACAAGGTCCAGACTATTTTATCACCACCATTAACCTCAGACAGagagCTTGTTCAACAGTCAGGATCATCACACAGTACTACTACCCTGCCTGGCCGGACCGGGGCGTCCCTAAAGACTCATCCTCACTCTGTGCCTTCACTGAGCATGTGCGGCAGGAATTGGAAGCTATTCCACAACTGGGGCCGGCTGTGGTGCACTGCagTGCAGGTGTTGGGCGTTCAGGGACATTTGTGACGTTGTTGTGGCTGATGCAGCTGTGTGCGAGGGGCATCCGGCCTGATATCCGGGCTGCTGTGGAGGATCTACGGCTACATCGAATGTGGATGGTCCAAAATCTGGAGCAGTACATATTTGTTCATCAGTGTCTGCTACACTGGCTCCGTGGAGGAACCTCAGCACGGCCACCAGTTCAGGGAGCCAGTTCAAAAATGAACCACCACAGTCAAGATCAACCGCACAGCTCCCTGGGCCATTCAGGGAGGAGACATCGCCATCGTCAGCACACAGTTACATCAGCCCAACCACAGAACACATTGCAGCAGATTTTGAACCCTGGAATGCTACTGAGGAAGTTACTGCCTTCCTCATCACCGTTTAATCCAGGCTCACATGCTTCCTGAACTTACAAACTGTAAAGCTGAGAATACAGAAACAGTCAAGACAAAAAATATTATGCATGTCCTCATACAGCACCTAAGGTAGGACACTGTAGAAATAATGCTGTGTGCACTGTATGACATGTCCTGCAGGTGAAAAAGTGGTTGGACATGCACATACATGCTGGTGAAGAAACCTGAGACAAAGCAGAAAAATTAAGGAAGTACCCTGCCAGTCAGGTCAAACCTGTTCCTTTACTATGAATCACTTACCTTTGAGATTTATGAGAACAAGGTGCTGCTCCCTTTGCATACAGATACATACTGAGGGTGtacattttttctttgtttgccTCCACTATTGATGAAGTGATGCTGCTAGATgacttttatttagtttttctttgtgtGAAAATCATTGTGAATCATTTAATATCACACACTTCTAAGGATGCATGTGCAGAATTGATAGCATACTTGCTAGAAAGGCCAACACATGGTATAGTGGCTGTACAAAAAAGGTCATgtttcaaaaacacacaggcacTGCCATTCTCCTTAAATGACTGAAACCCATTACAGTACATGAAGGAGCTATGAGTTTTATACATTATAGAACATAAAGGGCTAACCCCA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67335 lncRNA downstream 11229 16714061 ~ 16714748 (-) True G50389
TU67328 lncRNA downstream 46301 16666050 ~ 16679676 (-) True G50382
TU67324 lncRNA downstream 62932 16660998 ~ 16663045 (-) True G50378
TU67316 lncRNA downstream 144995 16580076 ~ 16580982 (-) True G50371
TU67178 lncRNA downstream 307364 16416921 ~ 16418613 (-) True G50278
TU67417 lncRNA upstream 214118 16944771 ~ 16944972 (-) True G50443
TU67455 lncRNA upstream 333165 17063818 ~ 17064746 (-) True G50476
TU67456 lncRNA upstream 334344 17064997 ~ 17065274 (-) True G50477
TU67479 lncRNA upstream 340469 17071122 ~ 17074733 (-) True G50483
TU67480 lncRNA upstream 340469 17071122 ~ 17074355 (-) False G50483
XM_039801229.1 mRNA downstream 16208 16706498 ~ 16709769 (-) False ogg1
XM_039801228.1 mRNA downstream 16209 16706151 ~ 16709768 (-) True ogg1
XM_039800424.1 mRNA downstream 19438 16685307 ~ 16706539 (-) True LOC120559001
XM_039801227.1 mRNA downstream 67175 16649897 ~ 16658802 (-) True wdr46
XM_039801804.1 mRNA downstream 82107 16630572 ~ 16643870 (-) False nr2c2
XM_039801855.1 mRNA upstream 15726 16746379 ~ 16789963 (-) True LOC120559825
XM_039801466.1 mRNA upstream 93121 16823774 ~ 16916378 (-) False LOC120559618
XM_039801464.1 mRNA upstream 93121 16823774 ~ 16916378 (-) False LOC120559618
XM_039801465.1 mRNA upstream 93121 16823774 ~ 16916378 (-) False LOC120559618
XM_039801463.1 mRNA upstream 93121 16823774 ~ 16916378 (-) True LOC120559618
TU67071 other downstream 442121 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1872160 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1872160 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2191372 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2580755 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 957462 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1108891 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2149712 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2969120 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2970677 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile