RNA id: XM_039801397.1


Basic Information

Item Value
RNA id XM_039801397.1
length 2477
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC120559574
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17325207 ~ 17358698 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTAGAGGTCCTGTGGGGAGAGGATCACACCACACCGGCCGAGGCGCGGATACAAACATAGTCTACTGGAGGCTTGAGGGCATCCGAGCCAAAAAGGACTTTTTACCCAGAGAGCACTCGGTTCTCTCCCCACGAGCTGCCTCGGTTAATGGTGATCAGGGTGAGCGGGGTGGTCGCCGCCTGCATctcctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctaccCTCCTCAGCGCACAGGCGCCCTGCACTCCAGTCTGCTGACACACCGGGAGGACAGTCCGCACTAACACGTCCGCGTCATTGGACTCTATGTGGATACAAAGCCCGGTCACAACACACATCCATGGGGATACTTTAGTGGGAACTGCAGCCTGCGACCTTTTACATGAACACAGagcGGCACTGAAAGACCTTGGAGAGCCAGAGAACGAGTGCTGGCCTTCCTTTGACTGTGTGACCAGCGAATGAGCCTTGTTCATGCGTCTCCCTGCGTGCCACTCCCACATTACTATGAACTGTGAGCAGGACTTTGCAGACGGGGGCTTGGGAGTGACCCTAACACTACGCCTGCTCATGCATGGAAAGGAGGTTGGCAGCATCATAGGAAAGAAAGGAGAGACTGTGAAACGAATACGAGAAGAGAGCAGTGCTCGGGTCAACATCTCAGAGGGCTCCTGTCCAGAGAGGATCATCACCATCACCGGCTCCACAGACTGCGTCTTCAGAGCTTTCACCATGATCACATACAAACTGGAGGagGACCTGACTGCGCTGGTGGCCAACGGCACCATCAGCTCCAAGCCACCAGTCACCCTGCGGCTGGTCATCCCTGCCAGCCAGTGTGGCTCTCTCATCGGAAAGGGAGGGGCCAAGATAAAGGAGATCAGAGAGAGCACTGGAGCTCAGATACAGGTGGCAGGGGATTTGCTGCCCAACTCTACTGAGCGAGGGGTGACGATATCTGGGAATCAGGAGTCTGTAATCCAGTGTGTCAAGCTCATCTGCACAGTAATCCTGGAGTCTCCCCCAAAGGGTGCCACCATCCCCTACCGACCCAGCCCCTCACCCGCTGCCCTCCTCATCGCTGGGAACCAGgtgtATGAGGCATCAGAATTTGCACCCCACCCTTTGTACTCCGTCACCCAAGGTGGCCTGGACCTCCAGCAGGCCTACACTTTGCAAAACCAATATGGCATTCCACACTCAGAGATGGCCAAGCTACATCAGCTGTCAATGCAGCAAGGCCTGAGTCAAATGGCCCAGCCTGCTTCGACTATCATACCTGGGATGGACTCCAATTCTCAGACATCTCAGGAGCTGCTTATTCCCAATGATCTGATCGGCTCGATCATCGGACGTCAGGGCACTAAGATCAACGAGATCAGGCAGGTGTCTGGAGCTCAGATCAAGATCGGCAGCCAGCTGGACGGTACAAGTGACCGTCATGTCACTATCACAGGAACACCAGTCAGCATCAACTTGGCCCAGTACCTCATTACCTCCTGTTTAGAGACCGCCAAATCCACGGCCCAGGCAGCAACTATGGCAGCTCCAGTCGACCTCAACATGGCCTTCACCCAGCCAGCCTCCCCAGCTGCCTCCCCTGCACCCACCATGGCCACAATGGGCACCCTGACTCCGGCTCATATGCTGGGCACCCCATATGGTGCCATGCCCCTCTCCGGCCTGCTAGGGATGAAGTCTGTCCCATTTCTGACTCTGTCCAGTCCTGGCCCCACCGTGGCTGTCACTGCAGCGCCCTCCCACACCACTCTGGCCGCCTACACCACCAAAATCTCCTCAGCCAACTGCATTAAAAAGCCAGAGAGACAGAAGTTTGCTCCATACTGATGCAGCCTCTGAACTCTGGAGAGTCAGATGAAGGACAGCTGCAGTGTTCTTTCACAAAACGCCTGATGTAGCCATATCCGCTGGCAGAGATGCTCTTGACTTTTATTCTATGATGCACCAACAGAGGAGAGACCAATGGAGATGTGGATAAAGCTATTAAAAGTTATTTACGGTTATAGATAATTTGTGAGTTTCCCATGAATTGATGGACTGCTTTCATTGTCACCTCATCACTGTTATTGATCACTAAAAGAAGGGCTGGAACCTCACCTGAGAAATACATGTTTAAATTACAGTTTTCACATGTGTATCTCAAGTTAGAGATCAGCTATAAGTATTTATCCTTCAATAAATTTGTAAATTATACTCAGATGACAAATACTCTGTATGATGCTTTTATACAATGTATGTTTGCCTCTTGaagtttttaagaaaatttttaaatgtttgggggggtggggattttcttttttaataatctGTGCTATGGTACTGTACTTTACTGTTCAGTGTTATGTTCTTTttgttggattttattttgaatgtgcaacttgtttaatctttatttattaGTATTGTTTCATTTATTAAAAGTCTTTGTTTCCTGA

Function

GO: NA

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67638 lncRNA downstream 73933 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 119578 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 131572 17190077 ~ 17193635 (-) True G50567
TU67603 lncRNA downstream 171780 17152200 ~ 17153427 (-) True G50553
TU67718 lncRNA upstream 111509 17470207 ~ 17470675 (-) True G50647
TU67797 lncRNA upstream 324350 17683048 ~ 17683519 (-) True G50709
TU67884 lncRNA upstream 423990 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 616057 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 616057 17974755 ~ 18101572 (-) False samd10b
XM_039799285.1 mRNA downstream 79004 17242880 ~ 17246203 (-) True rpl32
XM_039799280.1 mRNA downstream 84464 17216184 ~ 17240743 (-) False LOC120558336
XM_039799275.1 mRNA downstream 84712 17209216 ~ 17240495 (-) False LOC120558336
XM_039800744.1 mRNA upstream 46404 17405102 ~ 17520570 (-) False LOC120559199
XM_039800745.1 mRNA upstream 46404 17405102 ~ 17502486 (-) False LOC120559199
XM_039800742.1 mRNA upstream 46404 17405102 ~ 17482058 (-) True LOC120559199
XM_039800743.1 mRNA upstream 47006 17405704 ~ 17482058 (-) False LOC120559199
XM_039799559.1 mRNA upstream 163230 17521928 ~ 17542122 (-) False tasorb
TU67071 other downstream 1041351 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2471390 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2471390 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2790602 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3179985 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 329417 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 480846 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1521667 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2341075 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2342632 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile