RNA id: XM_039801413.1


Basic Information

Item Value
RNA id XM_039801413.1
length 2538
RNA type mRNA
GC content 0.43
exon number 8
gene id bgnb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19615646 ~ 19632023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACTCTCAGTCATTTCCTCGGTGTGGACTGAAACGAGCACACGCACGGTGCCCCGTCACGGTTCACAGTGGCACACAGTGGCGGAGGAGCTGTGGCTGGATGTCAGAGGACCACAGGGAAATACTGCAACAATCCCTAAATGTGATGAAAAAATAggactttaaaaagaaatctccaGGATAATCTGACGCACAGAAAGAGaaacgttttttgttttggaatTTGGAATTAATATCTTATTTTGGTCCATAAGgTGTATAAGTGAAAGATGTTGCAACATTGCACCCTCCTGCTGTTGCTATGCGTGGCTCGGCTGCTCTCCACCTCCTCGGCCCTGCCCTTCGAGCAGAGAGGCTTCTGGGATTTTGCCATGGACAGCATTGACAGTGGCGggatgatgacaatgatgagGGATGAGGAAGAAGGCTCGGCTGTAGAGGAGATCCTCCCCCCCGACATACCTGTGTGCCCCTTCGGCTGCCACTGTCAGCTCAGGGTCGTCCAGTGTTCTGACCTCGGTCTGACTGAGGTGCCAAAGAATATTCCTCTGGACACCAAGTTCTTGGACCTGCAGAACAACCGTATCACCGAGCTGAAAGAGAATGACTTCAAAGGCCTTACTAACTTATAtggtttgTCTCTGAGGAATAACCTTATttccaaagtccaccccaaaacATTCGTGCCTCTGAAGCACATGCAGAAGCTCTACTTCTCCAAGAATCTGCTGACCACTGTCCCCAAGAACTTGCCCGCCTCTCTGGTTGAGATAAGGATCCACGAGAACcgcatcaaaaaggtggaagcTGGAGCCTTCTCAGGACTGGGCAACATGAACTGCATAGAAATGGGAGCAAACCCCATCCACAACAGCGGTTTTGAGCCTGGAGCCTTCAAGGGACTGAAACTGAATTATCTGCGTATATCAGAGTCCAAACTGACTGGGGTGCCAAAAGAACTACCAGATAGTCTCCATGAGCTTCATCTGGACCACAACCAGATCCAGGCTGTGGAACTGGAAGACCTGAAACGCTACAAAAACCTGTACAGGTTGGGCCTTAGCTTTAACCATATCCGTAACATCGAGAACGGCAGTCTGTCCTTCCTCCCCAGGCTGAGAGAGCTGCATCTGGACAACAACCGCCTCACTCGCGTCCCCAAAGGCCTCCCAGAAATGAAATACCTACAGGTGGTGTACCTCCATTCCAACAACATCAACCAGGTGGGCACGGATGACTTCTGCCCTCGAGGATTTGGGATGAAGAGGACATTCTATAACGGCATCAGCTTGTTTTCTAACCCTGTCAACTACTGGGAGGTGCAGCCTGCAACGTTCCGCTGTGTCAGCGACCGGCTGGCCATTCAGTTTGGCAACTACAAAAAGTAAAGACAGGAGGatacagagagatggagagaatgaGGGGAAGGTGATGGCGGAGGAGGAGATAatttaaataatgaaaaaaacttGAGAGATGGAGCAAAGGGAATTCCTATTTGAGattattatctttattattgtttttgtagAGAGGATAAGTTATGGAGAGGGTGGGCAATAAACTGTTGAAATAGAAAGAGAAGTGAAGTTTTCCCCAAGCCTAAATCgatgaaaaatgaaaacctGTGAAGCATTTTTCATTCCATATTTTTTACACAATAGTGCTTATTGTGAAagaagtcttttttttaattaatattttggTTAAGATTACAAGTAAAATATAGAAAAGCAATACATTAtagattttttatatatacataaaaaggAGATCTGTATGACTTTCTGTATGGTGCTGATTTGGGAGATAAACAAGAAATAGACAACGCATTGTCTCTGTTTCACTGGTCTGAAGCCATTTGGCATCAACTAACTAATCACAGATTTTGGGCTGTTTTCCAccatttacaaagacaaaaacaactgcACAAAATGTAGAAACTATTATTCACCTTTATCagttcaaaaacattttttgtatatatcacagattttgacattttaaaattccCCTCATCAGTGCTAAACATCTTTTCTCATTGATCCgaggtaactgaaccaccagcctAGCCTGCCTGTGTAACGTGTCTATTATGTGCCTTTACTAAACATTATGCTCTCTGTATAATACTTTAATGCAGTATTCCTTGAGGGGACACTAGTGGTAGTGGTTTTTTTGCCCCATTTAGAGAAAACACACATCCGCTTTGCTTTGAGACAATGAAGGCAGTGTGTTCACATAGTGATACGAACAATAGTAGTGTTGATGCAttgttttgcacagtttttttttccttctgttaTGCTTTATCTGCTTCAGGGTTATTGGAGGGTTAGATGGTTTACATTGGTAGACCTATGTGGAACTACTTTAGCCATTAGAATTCTGTCCTGTCTCTGTACTATAATCTGACAAGCTACTGCTGCATGtgaataaagacattttagCCTGCTGCATAAAGCCAGAGAACAACTGATGCCCCTGGGTTGGATGCTGtgtgtaagaaataaaaaattgataTCAAACGTGGAAAAA

Function

GO: NA

KEGG:

id description
K08118 BGN; biglycan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68468 lncRNA downstream 18138 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 156241 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 200451 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 387741 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 665210 18948833 ~ 18950436 (-) False kcnd3
TU68493 lncRNA upstream 167182 19799205 ~ 19805539 (-) True LOC120558911
TU68516 lncRNA upstream 193388 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 431085 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 433839 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 433839 20065862 ~ 20072831 (-) True G51467
XM_039801619.1 mRNA downstream 1049 19604756 ~ 19614597 (-) True b4galt3
XM_039801235.1 mRNA downstream 13577 19588284 ~ 19602069 (-) True atp6ap1lb
XM_039800316.1 mRNA downstream 40072 19438628 ~ 19575574 (-) True cacna2d3a
XM_039800955.1 mRNA downstream 389815 19221020 ~ 19225831 (-) True capza1b
XM_039800733.1 mRNA downstream 537865 18945968 ~ 19077781 (-) True kcnd3
XM_039800432.1 mRNA upstream 4991 19637014 ~ 19649377 (-) True si:dkey-32e6.6
XM_039800190.1 mRNA upstream 19215 19651238 ~ 19662853 (-) True tktb
XM_039800433.1 mRNA upstream 31349 19663372 ~ 19667912 (-) True lrrc23
XM_039800208.1 mRNA upstream 36073 19668096 ~ 19679320 (-) True rbm10
XM_039800207.1 mRNA upstream 36073 19668096 ~ 19678604 (-) False rbm10
TU68271 other downstream 728893 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1729313 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1925886 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 3331790 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4761829 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 67750 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 69307 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 74656 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 688744 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1240685 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile