RNA id: XM_039801417.1


Basic Information

Item Value
RNA id XM_039801417.1
length 3102
RNA type mRNA
GC content 0.43
exon number 10
gene id ptpdc1b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16166305 ~ 16173032 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTTGTTGTATTCTATGTTAGATTGGTCTTACCTTGTTAGCTAATTTAAAGttgattattttgcacattgaTTGGTCTTGAAGAGTGATAATGAATGTTGTACTGCGATGAGCTACTATGGTCAAACTACCGGCTAAGAGTAGCAGTTTGCTAATCCTTTAAAATGGATTATGTCTGCTTTACATTTGACTGAATATGATTTATGATGTCGATATTTGAtcaaaatgtgtatttgtaAGTGGTTCTCTCTAACTTGTCTTATCATGTAATGACATTTGAGAGATCTTTGTTCGGTTAATGTGTTTTTAGCTTGTGGACATGGTATGTCTTTATATTTGTTCTGGTTAAGATCAGGgacaatgtttttgtgttggctggacaataaagttgattCTATTCTATCTATAAAACATATGAATCACAAAGACTTTTACagtccaaaaaacaaaacaaaaacccgAGATTTGGTTATTTATGAGATTAAGATGCCTTTTCTTGACTCTGTTAGGAAACTGCTTATAGAACAGTATTTCAGGCTTAAGGCTCTGCTATGACTGTGGATGCGAGTCTAAGTGACTGTTCATATGGCACTCCATGCAAAGACAAGCGGTGGAGCTCTGATGGAATTCATCAGAGCCCCCAGGGCGAAGTACACAATAGTAGGAGAAGCTATACGTTATGTTATTCCTGAACATATGCAATGCTCAATCGGCTGTGGAGGTCAAGCCTGCAAGTATGACAACCCAAGTTACTGGAGTGATAACCAACAGGCCATAAAAGGCCTCTACTCATCCTGGGtttctgattattttctcgCTATGTCCAGACCCTCAACAGAAATCATTGAGAAGTATAACATCATTGATCAATTCAAAAGgAATGGTATTAAAACAGTGATCAACCTACAGATACCTGGTGAACATGCCAGCTGCGGAAACCCTCTGGAGCCAGAGAGCGGCTTCTCATACCGCCCAGAGGTCTTCATGGAAAACAACATTTATTTCTACAATTTTGGCTGGAGTGACTATGGAGTGGCCAACCTTACCACTGTGCTAGACATGGTGAAAGTCATGGCCTTCGCACTGCAGGAGGGAAAGATAGCAATCCACTGTCACGCTGGTCTGGGCAGAACAGGTGTGCTGTTAGCATGCTTCTTGGCCTATGCTACCAGGATGACTCCTAACCAGGCTATTTTATATGTACGTGCTAAACGCCCCAATTCCATCCAGACCCGAGGTCAGCTGCGTTGTGTGAGACATTTTGTCCAGTTCCTTGCACCTTTGAGGAGTGTGTTTTCCTGTGCTGAGCCACGATTCAACCCAGTCACCCTGTCCCAGTACCTGAACCGCCAGAGACACATATTGCATGGCAATGAGAGGAAGGAGCTGAGGCACCTCCCAAAGATTGTCCAGCTCGTGTCTAGGCTGCTGTTGGACATTGCAGAGAATCGACAGGTGATTGAGGAAGACATTCTTGAAGCCCCTGATATTGATGACATAGAGATGACTCTCAGCATCATTGAGAAGATGGGCCCTGAGTTATTAACAAAGGAGCCCCGCTTGCCAGGTGCGCCCACATTACCCAGACATTTCCACGAGCCACCAATCTTCTACCATCGCAAAAGTCTGAGCTACAGCGAGTCCGACCTGAGACGATTGGGCTCACAGCTCAACCTCCTCACACAACCTCCGGGCTCCATGTCACAGAGTAGTATTGAGATGTCTCTTTCCCCATTTGAGGCCACTTCTGGCGTTTCACACAGTCTAACAGGCTCACTCTGGCAAATCAAGAATGTAAAAGATGGAGCCGTTCTGCGGAAGAAAGTGAAGCGGAAAACCATTCAACGTAGTGAGTCAGTGGGAAACAATGAATCTACCAAATACATTGGCATGTTGTCCAGGTGGAAGGCAGAGCAGAGGAAAGAGTTACTAATGAATGGGACGAAGCCTCAAGACAGAGGAGTGGAGCAATCGGAGAAGTCAGAGGTGCCCTTTATTACCCTGCAGTCAGAGTTGTCCCTGGACGCCAGGAGGTTGCTCGTGGCACAGGCCCTGGCAGTGGACCTTTTTCTTGATGGAGAAGAAGAGCACAAAAACTATGTCTTGGCCTGGCAGGCAGAAATGAACCAAGGCGGTGGCTGGGAAAGGCTGTGTATGGAGCGGGATCCCTTTATCCTCACTGGGCTCATGTGGGCATGGCTTGAGCAGCTTAAAGAGCCAGTCATCTCCATCCAGGAAGCCAAAGCCTTCAACGCCAACAACACTGATGCTCAAACTGTCCTCAACACACTTGACCAGGCCTCTAAACAAACATTAACATGCATACTAAATTGTATGGCTCATATGATGGAAATACCAGAAGAGGTTGAAAATGCTTTCCTGAATCGTTCAATCAAAGCTTTTACCTGGATCAAAAATAACTCAGAGGATGGAAGCAAAGTGTACGAATCCATGACTACAGCCCTACGATGTGTCCTTGAGGACATGAGATCTAGGGTCATCGAAGCAGATGAGCCGCCAACGTCTCCCTTCTCTTTAACATAGGTACTACCAGTCATGCATATGTGGTGCACTGTCTGGACCTCTATGTGGAggcatgaaagaaaaaaatatgctTTTGTGCCTTGTGGGCAAATTGTTTCAAATATAATAACTTTTCCAAGAGTTTGTCAATTTGagctaaatataaaaatgtatcacCGTACATTTTGTCATTAGATTATTTTGTCAGAGATTATTGTCACTGATACATAACTATAATATGTCTCAGTATTTTCTTCTGTAGTGACATATTGAAGCAGGTGACAGGTGACGAAAGAATATTTAGTAAACATTATGCCTTAAGACTGGTCATATTCAACAGTGACATACCTCAGCTCCAAAAGTGTAGTCAATGAACATTATCCTTACACCTTTACAAACTTATTTTTTCTTAACAAGCACGTTTATCACACAGTGTATCAACGGAGGATTTCTCATCTGTAATAAATGTTATATTCTGGTTTGTGTAAACATAGACTTCCCATCCTAATGtctgcatacagtatatgatgACAAGTTCATAATTAAAGCAAATAGTCCTCCTTCTGGAGGGTTGTGCA

Function

GO: NA

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66980 lncRNA downstream 209633 15952530 ~ 15956672 (-) True G50143
TU66991 lncRNA downstream 233007 15930121 ~ 15933298 (-) True G50153
TU66970 lncRNA downstream 270305 15879334 ~ 15896000 (-) True G50136
TU66972 lncRNA downstream 276188 15886890 ~ 15890117 (-) True G50138
TU66923 lncRNA downstream 477878 15685011 ~ 15688427 (-) True G50104
TU67119 lncRNA upstream 113462 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA upstream 200285 16373144 ~ 16379623 (-) True G50230
TU67178 lncRNA upstream 244062 16416921 ~ 16418613 (-) True G50278
TU67316 lncRNA upstream 407217 16580076 ~ 16580982 (-) True G50371
TU67324 lncRNA upstream 488139 16660998 ~ 16663045 (-) True G50378
XM_039799246.1 mRNA downstream 4292 16154061 ~ 16162013 (-) True LOC120558319
XM_039800936.1 mRNA downstream 70502 16066540 ~ 16095803 (-) True nup210
XM_039800042.1 mRNA downstream 104409 15969198 ~ 16061896 (-) False LOC120558787
XM_039800043.1 mRNA downstream 104411 15969198 ~ 16061894 (-) False LOC120558787
XM_039800037.1 mRNA downstream 184361 15968560 ~ 15981944 (-) False LOC120558787
XM_039799887.1 mRNA upstream 251361 16424220 ~ 16425947 (-) False LOC120558718
XM_039799888.1 mRNA upstream 251361 16424220 ~ 16425947 (-) False LOC120558718
XM_039799886.1 mRNA upstream 251361 16424220 ~ 16425947 (-) True LOC120558718
XM_039799881.1 mRNA upstream 253211 16426070 ~ 16429565 (-) False mbd4
XM_039799882.1 mRNA upstream 253211 16426070 ~ 16429564 (-) False mbd4
TU66613 other downstream 1312488 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1312488 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1631700 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2021083 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 2912833 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 108185 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 1515256 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1666685 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2707506 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3526914 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile