RNA id: XM_039801429.1


Basic Information

Item Value
RNA id XM_039801429.1
length 282
RNA type mRNA
GC content 0.54
exon number 1
gene id LOC120559596
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40469283 ~ 40469564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGTATCGTTTTTCCGGCTGTTGCCGACGGACGCGGAGCAAAACTATACTGTCTATGAGCAAAACAGACTCCTGTGTTCGTAGCCGTTAGCTCTGTTAGCGCCGTTAGCTTCTTcttgtctgttttttgttgttgaatatggGAGAGGCAGATGTGACGCTGAATCAGACCGACGAGAAGCCTCCGGACTCGGGGCTGGTTCCCGGGGAGGACTCGGTGGTCTGGAGCCACGAGGTGGAAGTGTGTCTGTTCCACGCGATGATCGGACACAAACCCGTCGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76313 lncRNA upstream 78068 40390374 ~ 40391215 (+) True G56862
TU76303 lncRNA upstream 90003 40293712 ~ 40379280 (+) True G56853
TU76309 lncRNA upstream 98482 40370183 ~ 40370801 (+) True G56858
TU76239 lncRNA upstream 183905 40284770 ~ 40285378 (+) False G56827
TU76243 lncRNA upstream 201616 40264122 ~ 40267667 (+) False G56827
TU76325 lncRNA downstream 23585 40493149 ~ 40535009 (+) True G56871
XR_005639241.1 lncRNA downstream 38133 40507697 ~ 40510459 (+) True LOC120559366
TU76294 lncRNA downstream 53207 40522771 ~ 40524538 (+) True G56848
TU76296 lncRNA downstream 53207 40522771 ~ 40524538 (+) False G56848
TU76340 lncRNA downstream 72811 40542375 ~ 40560935 (+) True G56881
XM_039801778.1 mRNA upstream 4357 40464551 ~ 40464926 (+) True LOC120559775
XM_039801763.1 mRNA upstream 17869 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA upstream 17869 40430117 ~ 40451414 (+) False hm13
XM_039799940.1 mRNA upstream 283127 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA upstream 283127 40160010 ~ 40186156 (+) True ptpn18
XM_039800489.1 mRNA downstream 27285 40496849 ~ 40515023 (+) True LOC120559068
XM_039801037.1 mRNA downstream 203467 40673031 ~ 40691622 (+) True LOC120559371
XM_039801039.1 mRNA downstream 235754 40705318 ~ 40710077 (+) True LOC120559372
XM_039800491.1 mRNA downstream 253088 40722652 ~ 40725794 (+) True LOC120559071
XM_039799518.1 mRNA downstream 266353 40735917 ~ 40744474 (+) True LOC120558500
TU76286 other upstream 12108 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 320663 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 357995 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 451968 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 550920 39808857 ~ 39918363 (+) True G56127
TU76475 other downstream 631030 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 651711 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 2002356 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 2908782 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 3048386 43517950 ~ 43518074 (+) True LOC120559932

Expression Profile