RNA id: XM_039801487.1


Basic Information

Item Value
RNA id XM_039801487.1
length 5533
RNA type mRNA
GC content 0.57
exon number 54
gene id col2a1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14565817 ~ 14590838 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTTTGGAATATACGAAGATCCATACAAGGCACAGTGGACATAAAACCGCGGTGCTTGCCCTGACGCGGTGGGTGCAGAGTGCCAGCTGGGGCCCCGCGTTGGATTCCACTTAGATTTTGGAGGGTTTGACTGCATGGTGCCATAAGTCTCTGGGAACACACACTTAACACACCACTGACTGAAAGCCTGGTCTCATCCTTCACTTCTCACCCAAGCTACTGCATGTCTAATATTTAGACATGTTCAGCTTTGTGGACTCAAGGACTGTTCTGCTACTTGTAGCATTCCAAGTTGTTTTACTATCCGTGGTCAGATGTCAGGAAGAGGACGACCAGGAGGCAGGTGGCTGCATCCAGGACGGCCAGCAGTATAATGATAAGGATGTGTGGAAGCCCGAGCCGTGTCGTATCTGTGTGTGCGACAGTGGAGCGGTTCTGTGTGATGAGATAATCTGCGAGGAGATCAAAGAATGTGCCAACCCTCTCATCCCATCTGGAGAGTGCTGTCCCATCTGCCCTGCTGATGCCAGTGCCCCCATtgAAACGATTGGTGCTAAGGGCCAGAAAGGTGAACCAGGAGAGATTGCAGATGTTGTAGGACCAAAAGGACCACCAGGCCCTAtgGGCCCCCCAGGTGAGCAGGGAGTCCGTGGAGAAGCTGGCGCTAAGGGTGATAAGGGAAATGCAGGACCTCGTGGAAGAGATGGTGAGCCTGGCACCCCTGGGAACCCCGGACCCCCTGGCCCACCTGGACCACCTGGACTTGGAGGGAATTTTGCTGCTCAGATGGCTGGAGGTTTTGATGAGAAGGCCGGAGGTGCTCAGATGGGTGTGATGCAGGGACCAATGGGTCCTATGGGTCCTCGTGGCCCCCCTGGACCTAGTGGAGCTCCTGGACCACAGGGTTTCCAAGGTAGCCCCGGAGAGGCTGGAGAGCCTGGTCCAGCTGGAGCACTGGGACCGCGTGGACCACCTGGACCTTCTGGAAAACCTGGAAGCGACGGCGAGGCTGGCAAACCTGGAAAAGCTGGTGAGCGTGGACCTGCAGGGCCTCAGGGAGCTCGTGGATTCCCTGGAACTCCTGGACTTCCTGGAATCAAAGGACACAGAGGTCATCCTGGTCTGGATGGAGCTAAGGGAGAAACTGGTGCCGCAGGAGCCAAGGGTGAGTCTGGTTCTGCAGGAGAGAACGGCGCCCCTGGACCCATGGGCCCACGTGGTCTGCCTGGTGAGAGGGGGCGTTCTGGAGCTGCTGGAGCTGCAGGTGCCCGTGGAAATGATGGCTTGCCCGGTCCCGCTGGTCCACCTGGGCCTGTTGGTCCTGCTGGAGCTCCCGGTTTCCCAGGATCTCCAGGAGCCAAGGGAGAAGCTGGTCCTACTGGAGCCCGTGGATCTGAAGGAGCACAGGGACCCCGCGGAGAGGGCGGTACCCCAGGATCCCCCGGACCTGCCGGAGCATCGggtAACCCCGGTACTGATGGTATTCCCGGAGCTAAAGGATCTGCTGGTGCTTCTGGTATTGCTGGTGCTCCTGGATTCCCCGGCCCCCGTGGCCCACCTGGACCACAGGGAGCTACAGGACCTCTGGGGCCAAAAGGACAGTCTGGAGACCCCGGTCTTCCTGGATTCAAAGGTGAAGCTGGACCAAAGGGAGAGCTTGGCCCCGTTGGTCCCCAAGGTGCTCCTGGCCCTGCTGGtgaagaaggaaagagaggtGCAAGAGGAGAGCCTGGAACTGCTGGACCACTCGGACCTCCAGGAGAGAGAGGAGCTCCTGGTAACCGTGGTTTCCCAGGTCAGGatggtcttgctggtgctaaGGGTGCCCCTGGTGACCGTGGTGTTCCTGGTGCTGCTGGGCCCAAAGGTGCTACTGGAGACCCTGGACGCACAGGAGAGTCAGGTCTCCCCGGAGCCAGAGGTCTTACCGGTCGTCCCGGAGATGCTGGTCCTCAAGGCAAAGTTGGACCCTCTGGTGCTTCTGGTGAGGACGGTCGCCCAGGCCCACCCGGCCCTCAGGGAGCCCGTGGACAGCCAGGAGTGATGGGATTCCCTGGACCAAAGGGAGCCAAtGGTGAAGCTGGAAAGACAGGAGAGAAAGGTCTTGTGGGTCGCCCTGGTCTGAGAGGTCTGTCTGGAAAAGATGGTGAGACTGGTCCTGCTGGACCTCCTGGCCCTGCTGGACCTgctggagagagaggagagcaagGACAGCCTGGACCCCCTGGCTTCCAGGGTCTGCCTGGACCATCTGGTGCCCCAGGAGAGGCTGGAAAACCTGGAGACATGGGTGTTTCTGGAGAGGCCGGAACTCCTGGTGCTGTCGGACCCAGAGGTGAACGTGGTTTCCCTGGTGAGCGGGGTGGTGCTGGAGCTCAGGGTCTTCAGGGACCTCGTGGACTTCCTGGAACACCTGGAACAGATGGACCCAAGGGAGCCATTGGACCAGCTGGTGCTGCTGGACCCCAGGGACCCCCCGGCCTGCAGGGTATGCccggagagagaggaaatggtGGCATCCCAGGACCAAAGGGAGACAGAGGTGACAACGGACAGAAAGGACCTGAGGGAGCTCCTGGAAAGGATGGTGGTAGAGGTTTGACTGGTCCCATTGGTCCTCCTGGCCCATCTGGACCCAACGGCGCCAAGggtGAGACTGGACCCACTGGCCAAACTGGTGCTGCTGGTGCTCGTGGTGCTCCTGGTGACCGCGGGGAGGGTGGTCCTCCTGGGCCGGCTGGCTTTGCTGGACCTCCTGGTGCAGATGGTCAGCCTGGTGCCAAGGGAGAGCTTGGTGAGACTGGACAGAAGGGAGAAGCTGGTTCTTCTGGACCTCAGGGACCATCTGGGGCTCCTGGACCTGTGGGACCTACTGGTGTAACTGGACCTAAAGGAGCACGTGGTGCTCAGGGAGCTCCTGGTGCTACTGGTTTCCCTGGTGCTGCTGGCAGAGTTGGATCTCCTGGCCCTAATGGTAACCCTGGCCCCGTTGGCCCTGCTGGTTCTGCTGGAAAAGAGGGACCAAAGGGGGCTCGTGGTGATGCCGGTCCCCCAGGAAGACAGGGAGACGCTGGGCTTCGTGGAGCTCCTGGCGCACAAGGAGAGAAGGGAGAGCCTGGAGAGGATGGACCCCCTGGTGCTGATGGGCCTTCAGGTCCCCAGGGTCTGGGCGGATCTCGTGGTATTGTCGGTTTGCCTGGTCAGCGTGGAGAGAGAGGCTTCGCTGGTCTGCCTGGACCTTCTGGAGAGCCTGGTAAACAAGGAGCTTCTGGTTCCCCTGGCGACCGTGGACCTCCTGGACCTGTGGGACCCCCTGGACTTACTGGCCCTgctggagagactggaagagagGGTACCCCTGGATCAGATGGCCCTCCTGGTAGAGATGGAGCTACTGGAGTCAAGGGAGAGCGCGGTAACACCGGTCCCGCTGGCGCCCCTGGAGCTCCTGGTTCCCCTGGTGCCCCTGGACCTGTCGGACCCCTCGGCAAgcagggagacagaggagagagtgGTGCTCAAGGACCTGCGGGACCCTCAGGCCCCGCTGGAGCTAGAGGAATGGCTGGACCCCAAGGGCCACGTGGAGACAAGGGAGAGTCTGGTGAGACTGGAGAGAGGGGACAGAAGGGTCACCGCGGTTTCACTGGTCTGCAGGGTCTTCCTGGACCTCCTGGTTCCGCTGGAGATGCTGGAGCTGCCGGACCTGCCGGACCAAGCGGACCTAAGGGACCATCTGGACCATCCGGACCTGCTGGCAAAGACGGATCAAATGGACAGCCTGGCCCCATTGGACCCCCTGGACCTCGTGGACGTTCTGGAGAAAGTGGTCCTGCTGGTCCTCCTGGTAACGCTGGACCCCCTGGCCCTCCTGGTCCTCCTGGCCCCGGCATCGACATGTCTGCCTTCGCAGGTCTGGGTCAGACTGAGAAGTCCCCTGATCCTCTCAGGTACATGAGGGCCGATGAGGCCTCCAGCTCCCTGAGGCAGCACGACGTGGAGGTCGATTCCACACTTAAGTCCCTCAACAGCCAGATTGAGACCCTGCGCAGCCCTGACGGCAGCCAGAAGAACCCTGCTCGCACCTGCAGAGACCTGCAACTGTGCCACCCTGAGTGGAAGAGCGGTAACTACTGGGTTGATCCCAACATTGGCAGCACAGCCGATGCCATCAAGGTCTTCTGTAACATGGAGACAGGAGAGACCTGCGTCAACCCAAGCATCGCCGAGGTACCAAAGAAGAACTGGTGGACCAGCAAGAGCAAGGACCGCAAACACGTCTGGTTCGCAGAGACCATGAATGGAGGATTCCACTTTAACTACGCCGAGGATGGCCCTGTTGCCAACGCTGCCAGTATCCAGCTGACCTTCTTGAGGCTTCTGTCCACTGAGGCATCCCAGAATCTCACTTACCACTGCAAGAACAGCATTGCCTACATGGACCAGGCCACAGGCAACCTGAAGAAGGCTTTGAAGCTGCAGGGCTCCAACGATGTGGAGATCCGCGCAGAGGGCACCAGTCGCTTCACATACACCGTGTTGGAGGATGGCTGCAAGAAACATACAGACCGGTGGGGCAAGACTGTCTTTGAGTACAAAACACAGAAAACCTCCCGTCTGCCAATCGTGGACATTGCTCCCATGGACATCGGAGGAGCGGATCAGGAGTTTGGAGTGGAAGTAGGCGCAGTCTGCTTCTTGTAAAGTGGAATATCACAATGGCCCCccaaaaaacacaggaaataaataaactcaACCATGaaccattacacacacacttccacaaTAAAGAAGACTGGAAATTATAAAAGAAAATTGATACTTTTTCTCTCACAACGAAGTGCTCTCCAAGTTGTACTCCCTGGATGTTAGCACTGAAGGGCACCGGCAATATCTGTACACCACACCAGCATTCTCTGTCAACCCGCTTCCTGAGATCCAGTCATGTTTCCCATGGCCCACTGTTGACGGGAATGAGTCAGAGCCAGGAGGAAGAGGGACCAAGCGAACAAGTTATGGAGAACAGAAACATGACTTGATGTCACTTATTTATTGTCTAACCTGAATGGGCAGAGTTGAGGTAGGACTGGACGGGTTTACTTTGTAAGTAAGACAAGCCCCCTTTCCACTACAGAACAGCCGCACAGCCTCTGTCCCAGTCCTACTCCACCTCCCTCCCTGTTTCCCTCctgacacacaaatacagcatTTTGAATCAGTGTAGACCAAAATAAATATCCTCAGTAAAATCAAATCCAGGTGCTCCAGGCCTGTCCATCGTGACCAGGAGTCAACCCTTTACTGTGTATTATAAATCCTTGGTTCTATTGTTGTAAAAGTCTGTGTTTATAAACAACCAGatggttttatatatatttccacATTATGTGCGTACATGTGTCTATATGCACACCAACACTTTTTGGAAAGTGAGGTTACATTTGGGATGTATGTTTCAATGTCCTGTACCCCTTGACTGCCCATCAGAGGAAGGCCCAGTTCTCGTCCAAACTAAAAATATTTTGAAAGAA

Function

GO: NA

KEGG:

id description
K19719 COL2A; collagen type II alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66514 lncRNA downstream 21185 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 140202 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 162030 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 163187 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 345199 14220217 ~ 14220618 (-) True G49682
TU66554 lncRNA upstream 78615 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 82790 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 91872 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 254500 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 271957 14862795 ~ 14865747 (-) True G49862
XM_039800136.1 mRNA downstream 14259 14539788 ~ 14551558 (-) False map3k12
XM_039800135.1 mRNA downstream 14259 14539788 ~ 14551558 (-) True map3k12
XM_039799581.1 mRNA downstream 48703 14435245 ~ 14517114 (-) False dlgap4a
XM_039799578.1 mRNA downstream 48703 14435245 ~ 14517114 (-) False dlgap4a
XM_039799584.1 mRNA downstream 48703 14435245 ~ 14517114 (-) False dlgap4a
XM_039800751.1 mRNA upstream 25773 14616611 ~ 14620139 (-) True spryd4
XM_039800783.1 mRNA upstream 94207 14685045 ~ 14698017 (-) False LOC120559225
XM_039800785.1 mRNA upstream 94207 14685045 ~ 14697898 (-) False LOC120559225
XM_039800786.1 mRNA upstream 94207 14685045 ~ 14697876 (-) False LOC120559225
XM_039800784.1 mRNA upstream 94207 14685045 ~ 14697875 (-) True LOC120559225
TU66513 other downstream 31212 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 420595 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1312345 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2127092 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2174146 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 254500 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 254500 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1690206 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3097277 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3248706 17839544 ~ 17886333 (-) False zbtb46

Expression Profile